Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PX335_RS17475 Genome accession   NZ_CP118933
Coordinates   3636216..3636857 (-) Length   213 a.a.
NCBI ID   WP_017387055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain ML4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631216..3641857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS17455 (PX335_17450) aroK 3632120..3632689 (-) 570 WP_002116987.1 shikimate kinase AroK -
  PX335_RS17460 (PX335_17455) pilQ 3632701..3634866 (-) 2166 WP_017387053.1 type IV pilus secretin PilQ Machinery gene
  PX335_RS17465 (PX335_17460) pilP 3634929..3635456 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  PX335_RS17470 (PX335_17465) pilO 3635467..3636219 (-) 753 WP_017387054.1 type 4a pilus biogenesis protein PilO Machinery gene
  PX335_RS17475 (PX335_17470) pilN 3636216..3636857 (-) 642 WP_017387055.1 PilN domain-containing protein Machinery gene
  PX335_RS17480 (PX335_17475) pilM 3636857..3637915 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  PX335_RS17485 (PX335_17480) ponA 3638077..3640638 (+) 2562 WP_017387056.1 penicillin-binding protein PBP1a -
  PX335_RS17490 (PX335_17485) rrmA 3640693..3641517 (-) 825 WP_017387057.1 putative RNA methyltransferase -
  PX335_RS17495 (PX335_17490) - 3641520..3641852 (-) 333 WP_002116981.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23893.30 Da        Isoelectric Point: 5.4186

>NTDB_id=796526 PX335_RS17475 WP_017387055.1 3636216..3636857(-) (pilN) [Acinetobacter pittii strain ML4]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRSGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=796526 PX335_RS17475 WP_017387055.1 3636216..3636857(-) (pilN) [Acinetobacter pittii strain ML4]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAAGCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681