Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RAM31_RS07400 Genome accession   NZ_CP132368
Coordinates   1555990..1556763 (+) Length   257 a.a.
NCBI ID   WP_221610887.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA44     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1550990..1561763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM31_RS07380 (RAM31_07375) trmFO 1551334..1552641 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  RAM31_RS07385 (RAM31_07380) xerC 1553058..1553954 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  RAM31_RS07390 (RAM31_07385) hslV 1553951..1554496 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RAM31_RS07395 (RAM31_07390) hslU 1554562..1555965 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  RAM31_RS07400 (RAM31_07395) codY 1555990..1556763 (+) 774 WP_221610887.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RAM31_RS07405 (RAM31_07400) - 1556814..1556906 (+) 93 WP_031788481.1 hypothetical protein -
  RAM31_RS07410 (RAM31_07405) rpsB 1557105..1557872 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  RAM31_RS07415 (RAM31_07410) - 1557906..1558019 (+) 114 WP_001789890.1 hypothetical protein -
  RAM31_RS07420 (RAM31_07415) tsf 1558054..1558935 (+) 882 WP_000201387.1 translation elongation factor Ts -
  RAM31_RS07425 (RAM31_07420) pyrH 1559072..1559794 (+) 723 WP_000057331.1 UMP kinase -
  RAM31_RS07430 (RAM31_07425) frr 1559813..1560367 (+) 555 WP_001280006.1 ribosome recycling factor -
  RAM31_RS07435 (RAM31_07430) - 1560740..1561510 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28697.09 Da        Isoelectric Point: 6.3674

>NTDB_id=796451 RAM31_RS07400 WP_221610887.1 1555990..1556763(+) (codY) [Staphylococcus aureus strain UNC_SA44]
MSLLSKTRELNTLLQKHKGIAVDFKGVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=796451 RAM31_RS07400 WP_221610887.1 1555990..1556763(+) (codY) [Staphylococcus aureus strain UNC_SA44]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGGTGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428