Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O6P42_RS16600 Genome accession   NZ_CP118930
Coordinates   3432761..3433486 (+) Length   241 a.a.
NCBI ID   WP_025998648.1    Uniprot ID   A0AAW9AHG9
Organism   Vibrio alginolyticus strain V208     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427761..3438486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS16585 (O6P42_16585) - 3428894..3431215 (+) 2322 WP_053307280.1 Tex family protein -
  O6P42_RS16590 (O6P42_16590) - 3431320..3431784 (-) 465 WP_275115093.1 ATP-dependent Lon protease -
  O6P42_RS16595 (O6P42_16595) bioH 3431909..3432676 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  O6P42_RS16600 (O6P42_16600) comF 3432761..3433486 (+) 726 WP_025998648.1 amidophosphoribosyltransferase Machinery gene
  O6P42_RS16605 (O6P42_16605) nfuA 3433584..3434168 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  O6P42_RS16610 (O6P42_16610) nudE 3434345..3434914 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  O6P42_RS16615 (O6P42_16615) cysQ 3434959..3435786 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  O6P42_RS16620 (O6P42_16620) - 3436079..3436840 (-) 762 WP_062730773.1 type II secretion system protein N -
  O6P42_RS16625 (O6P42_16625) - 3436842..3437333 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.95 Da        Isoelectric Point: 9.2064

>NTDB_id=796448 O6P42_RS16600 WP_025998648.1 3432761..3433486(+) (comF) [Vibrio alginolyticus strain V208]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=796448 O6P42_RS16600 WP_025998648.1 3432761..3433486(+) (comF) [Vibrio alginolyticus strain V208]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAGCGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473