Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PXG99_RS05875 Genome accession   NZ_CP118911
Coordinates   1207855..1208634 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain XRD006     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202855..1213634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS05845 (PXG99_05845) fliH 1202899..1203654 (-) 756 WP_029973467.1 flagellar assembly protein FliH -
  PXG99_RS05850 (PXG99_05850) fliG 1203647..1204663 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PXG99_RS05855 (PXG99_05855) fliF 1204676..1206286 (-) 1611 WP_029973468.1 flagellar basal-body MS-ring/collar protein FliF -
  PXG99_RS05860 (PXG99_05860) fliE 1206329..1206649 (-) 321 WP_029973469.1 flagellar hook-basal body complex protein FliE -
  PXG99_RS05865 (PXG99_05865) flgC 1206660..1207112 (-) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  PXG99_RS05870 (PXG99_05870) flgB 1207112..1207501 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PXG99_RS05875 (PXG99_05875) codY 1207855..1208634 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PXG99_RS05880 (PXG99_05880) hslU 1208672..1210084 (-) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  PXG99_RS05885 (PXG99_05885) hslV 1210092..1210637 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  PXG99_RS05890 (PXG99_05890) xerC 1210653..1211570 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  PXG99_RS05895 (PXG99_05895) trmFO 1211640..1212947 (-) 1308 WP_029973471.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=796229 PXG99_RS05875 WP_003154263.1 1207855..1208634(-) (codY) [Bacillus velezensis strain XRD006]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=796229 PXG99_RS05875 WP_003154263.1 1207855..1208634(-) (codY) [Bacillus velezensis strain XRD006]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471