Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PXG99_RS00075 Genome accession   NZ_CP118911
Coordinates   17736..18488 (+) Length   250 a.a.
NCBI ID   WP_029973370.1    Uniprot ID   A0AAP3YC33
Organism   Bacillus velezensis strain XRD006     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12736..23488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS00060 (PXG99_00060) - 12959..13150 (-) 192 WP_003152639.1 hypothetical protein -
  PXG99_RS00065 (PXG99_00065) - 13603..16245 (+) 2643 WP_014418550.1 valine--tRNA ligase -
  PXG99_RS00070 (PXG99_00070) - 16304..17596 (+) 1293 WP_029973369.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  PXG99_RS00075 (PXG99_00075) comC 17736..18488 (+) 753 WP_029973370.1 A24 family peptidase Machinery gene
  PXG99_RS00080 (PXG99_00080) - 18615..19616 (+) 1002 WP_022552880.1 SPOR domain-containing protein -
  PXG99_RS00085 (PXG99_00085) - 19757..20326 (+) 570 WP_012118105.1 Maf family protein -
  PXG99_RS00090 (PXG99_00090) radC 20358..21053 (+) 696 WP_007408165.1 DNA repair protein RadC -
  PXG99_RS00095 (PXG99_00095) mreB 21145..22158 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  PXG99_RS00100 (PXG99_00100) mreC 22189..23052 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27257.97 Da        Isoelectric Point: 9.4293

>NTDB_id=796207 PXG99_RS00075 WP_029973370.1 17736..18488(+) (comC) [Bacillus velezensis strain XRD006]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTTAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=796207 PXG99_RS00075 WP_029973370.1 17736..18488(+) (comC) [Bacillus velezensis strain XRD006]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGACAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576