Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   PXI10_RS08225 Genome accession   NZ_CP118900
Coordinates   1563121..1563636 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain BDS5     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558121..1568636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXI10_RS08210 (PXI10_08210) - 1558231..1560048 (-) 1818 WP_052795808.1 motility associated factor glycosyltransferase family protein -
  PXI10_RS08215 (PXI10_08215) - 1560045..1561868 (-) 1824 WP_275054940.1 motility associated factor glycosyltransferase family protein -
  PXI10_RS08220 (PXI10_08220) - 1561878..1563121 (-) 1244 Protein_1602 DUF2920 family protein -
  PXI10_RS08225 (PXI10_08225) ctsG 1563121..1563636 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PXI10_RS08230 (PXI10_08230) tsaD 1563637..1564644 (-) 1008 WP_002860794.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  PXI10_RS08235 (PXI10_08235) - 1564641..1566035 (-) 1395 WP_032590530.1 M99 family carboxypeptidase catalytic domain-containing protein -
  PXI10_RS08240 (PXI10_08240) dxr 1566037..1567107 (-) 1071 WP_002873627.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  PXI10_RS08245 (PXI10_08245) cdsA 1567104..1567829 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  PXI10_RS08250 (PXI10_08250) - 1567838..1568176 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=796142 PXI10_RS08225 WP_002799196.1 1563121..1563636(-) (ctsG) [Campylobacter jejuni strain BDS5]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=796142 PXI10_RS08225 WP_002799196.1 1563121..1563636(-) (ctsG) [Campylobacter jejuni strain BDS5]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942