Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   PXI10_RS02750 Genome accession   NZ_CP118900
Coordinates   504349..505002 (-) Length   217 a.a.
NCBI ID   WP_275054963.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BDS5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 499349..510002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXI10_RS02715 (PXI10_02715) - 500073..500927 (-) 855 WP_059118349.1 lambda-exonuclease family protein -
  PXI10_RS02720 (PXI10_02720) - 500929..501156 (-) 228 WP_002874355.1 helix-turn-helix domain-containing protein -
  PXI10_RS02725 (PXI10_02725) - 501147..501404 (-) 258 WP_002865124.1 hypothetical protein -
  PXI10_RS02730 (PXI10_02730) - 501395..501664 (-) 270 WP_022552238.1 hypothetical protein -
  PXI10_RS02735 (PXI10_02735) - 502225..502497 (-) 273 WP_052799618.1 hypothetical protein -
  PXI10_RS02740 (PXI10_02740) - 502639..503481 (+) 843 WP_275054961.1 hypothetical protein -
  PXI10_RS02745 (PXI10_02745) - 503535..504362 (-) 828 WP_275054962.1 hypothetical protein -
  PXI10_RS02750 (PXI10_02750) CJE0566 504349..505002 (-) 654 WP_275054963.1 DNA/RNA non-specific endonuclease Regulator
  PXI10_RS02755 (PXI10_02755) - 505022..505795 (-) 774 WP_275054964.1 hypothetical protein -
  PXI10_RS02760 (PXI10_02760) - 505792..506523 (-) 732 WP_002929403.1 S24 family peptidase -
  PXI10_RS02765 (PXI10_02765) - 506663..506878 (+) 216 WP_002925661.1 hypothetical protein -
  PXI10_RS02770 (PXI10_02770) - 506901..507227 (-) 327 WP_032599246.1 hypothetical protein -
  PXI10_RS02775 (PXI10_02775) - 507270..508271 (+) 1002 WP_038402068.1 hypothetical protein -
  PXI10_RS02780 (PXI10_02780) - 508282..508932 (+) 651 WP_275054965.1 hypothetical protein -
  PXI10_RS02785 (PXI10_02785) - 508950..509330 (+) 381 WP_275054966.1 hypothetical protein -
  PXI10_RS02790 (PXI10_02790) - 509330..509716 (+) 387 WP_002861661.1 terminase small subunit -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25521.16 Da        Isoelectric Point: 9.9443

>NTDB_id=796129 PXI10_RS02750 WP_275054963.1 504349..505002(-) (CJE0566) [Campylobacter jejuni strain BDS5]
MKKLILLPLLSTLALADYTQYKPSEDFAKYFTKQSCSQVLDKFYYLNCYDYNLKGTKAVAYRLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYRNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHEVEVESIKKYKVNCGKF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=796129 PXI10_RS02750 WP_275054963.1 504349..505002(-) (CJE0566) [Campylobacter jejuni strain BDS5]
GTGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCTTTAGCTGATTATACACAATACAAGCCAAGCGAAGATTT
TGCTAAGTATTTTACTAAGCAAAGTTGTTCACAAGTTTTAGATAAATTCTATTATCTAAATTGTTATGATTATAATCTAA
AAGGTACAAAAGCTGTAGCTTATAGATTGGAAGCGGAAAATTTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAACATTCCTAAAAAATATCGCACTACATGGAGTGATTATAGAAACAGCGGTTATGATAGAGGACACACTCT
TTCTAATGCCTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCACAAAATCCAC
AAATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGAGAATTTTAAAGAATGTTATCAAGTGCCAAATCATGAAGTAGAAGTTGAGAGCATAAAAAAATATAAGGTTAATT
GTGGCAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

91.705

100

0.917
  CJE1441 Campylobacter jejuni RM1221

89.401

100

0.894