Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   PYV58_RS20300 Genome accession   NZ_CP118892
Coordinates   4341275..4342195 (-) Length   306 a.a.
NCBI ID   WP_227504278.1    Uniprot ID   -
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4336275..4347195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS20290 (PYV58_20290) - 4336557..4340495 (-) 3939 WP_034617447.1 PilC/PilY family type IV pilus protein -
  PYV58_RS20295 (PYV58_20295) - 4340512..4341291 (-) 780 WP_034617450.1 pilus assembly PilX N-terminal domain-containing protein -
  PYV58_RS20300 (PYV58_20300) pilW 4341275..4342195 (-) 921 WP_227504278.1 PilW family protein Machinery gene
  PYV58_RS20305 (PYV58_20305) pilV 4342195..4342716 (-) 522 WP_034617453.1 type IV pilus modification protein PilV Machinery gene
  PYV58_RS20310 (PYV58_20310) - 4342713..4343222 (-) 510 WP_051671103.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PYV58_RS20315 (PYV58_20315) ispH 4343364..4344314 (-) 951 WP_275059651.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PYV58_RS20320 (PYV58_20320) gmk 4344449..4345069 (+) 621 WP_034617459.1 guanylate kinase -
  PYV58_RS20325 (PYV58_20325) rpoZ 4345191..4345472 (+) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 33096.78 Da        Isoelectric Point: 8.3996

>NTDB_id=796113 PYV58_RS20300 WP_227504278.1 4341275..4342195(-) (pilW) [Acinetobacter sp. TAC-1]
MRFMTKHEIMGPQKGFTLIELIVALAIGLIISAAALQLFTGGLITAKMQEASAELQDSGVFGVDYIARDIRLANFGNVNN
PVLDTTTPNGGIIFTSGDPALGKANLQLKDVSAGLLTKSGGPTGTSSSSDQLTIMFQAPNKMMNCEGREVQTSEYVIQRY
FLRTDNGNLALACDANTPGNSVPSIAGLSDSNNGEVIMPRVDLVRFYIGAKAGNNFSYYTIEQFKTAVKAASSPNIPRVV
SIRMMVLVRSKDPITNKNIDPSKESFNFPDGDVTLTDKSTKYLRRLYTTNIALRNGLGEKIYETSN

Nucleotide


Download         Length: 921 bp        

>NTDB_id=796113 PYV58_RS20300 WP_227504278.1 4341275..4342195(-) (pilW) [Acinetobacter sp. TAC-1]
ATGAGATTCATGACAAAGCACGAAATAATGGGACCTCAGAAGGGTTTCACACTAATTGAATTGATCGTTGCTCTTGCTAT
TGGTCTTATTATTAGCGCTGCAGCTTTGCAATTGTTCACTGGTGGTTTAATTACGGCAAAAATGCAAGAAGCAAGTGCAG
AGTTGCAAGATAGCGGGGTGTTCGGTGTCGATTATATTGCTAGAGATATCCGTCTCGCGAATTTTGGAAATGTAAATAAT
CCAGTGTTAGATACAACAACACCCAATGGCGGAATTATTTTTACCAGTGGAGACCCAGCTTTAGGTAAAGCAAATCTACA
ATTAAAAGATGTAAGTGCAGGATTGTTAACAAAATCAGGAGGTCCTACTGGGACGAGCTCTAGTAGTGATCAACTCACGA
TTATGTTTCAAGCACCCAATAAAATGATGAACTGTGAAGGTAGAGAAGTACAGACTAGTGAGTATGTTATTCAACGTTAT
TTCTTAAGGACAGATAATGGTAACTTGGCATTGGCTTGTGATGCAAATACCCCAGGAAATAGTGTCCCTTCTATTGCCGG
ATTAAGTGATTCAAATAATGGTGAAGTGATTATGCCAAGAGTGGATCTTGTTAGATTTTACATCGGAGCAAAAGCTGGAA
ACAATTTTAGTTATTACACTATTGAGCAATTTAAGACAGCAGTAAAGGCAGCGTCCTCTCCAAATATCCCTAGAGTTGTC
TCCATTAGAATGATGGTTTTGGTGCGCTCTAAAGATCCAATAACAAATAAAAATATAGATCCATCTAAAGAAAGTTTTAA
TTTCCCTGATGGTGACGTGACTTTGACGGATAAAAGTACCAAATATTTACGACGTTTATATACAACAAATATTGCATTAA
GAAATGGCTTAGGAGAGAAGATTTATGAAACATCGAACTAA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(160-295)

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

46.291

100

0.51