Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PYV58_RS12870 Genome accession   NZ_CP118892
Coordinates   2743987..2744697 (+) Length   236 a.a.
NCBI ID   WP_004721139.1    Uniprot ID   A0A077KYT9
Organism   Acinetobacter sp. TAC-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2738987..2749697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS12850 (PYV58_12850) - 2739309..2740241 (+) 933 WP_004721119.1 family 2A encapsulin nanocompartment shell protein -
  PYV58_RS12855 (PYV58_12855) - 2740216..2742183 (+) 1968 WP_034614541.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  PYV58_RS12860 (PYV58_12860) - 2742426..2743229 (+) 804 WP_034614538.1 peptidoglycan DD-metalloendopeptidase family protein -
  PYV58_RS12865 (PYV58_12865) - 2743413..2743835 (-) 423 WP_004721138.1 OsmC family protein -
  PYV58_RS12870 (PYV58_12870) crp 2743987..2744697 (+) 711 WP_004721139.1 cAMP-activated global transcriptional regulator CRP Regulator
  PYV58_RS12875 (PYV58_12875) - 2745027..2746076 (+) 1050 WP_034614535.1 NADP(H)-dependent aldo-keto reductase -
  PYV58_RS12880 (PYV58_12880) - 2746172..2746957 (-) 786 WP_004721143.1 M48 family metallopeptidase -
  PYV58_RS12885 (PYV58_12885) - 2747069..2747374 (-) 306 WP_034614531.1 hypothetical protein -
  PYV58_RS12890 (PYV58_12890) - 2747515..2748306 (-) 792 WP_004820958.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26563.18 Da        Isoelectric Point: 4.6726

>NTDB_id=796106 PYV58_RS12870 WP_004721139.1 2743987..2744697(+) (crp) [Acinetobacter sp. TAC-1]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEESNFSEDELSTDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=796106 PYV58_RS12870 WP_004721139.1 2743987..2744697(+) (crp) [Acinetobacter sp. TAC-1]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCTCCTGGTCAACTACCTGAGTCAGTCAAAGCTTTGCTCAA
AAGAGCCCACATCAATCGTTTTCCAAAACGCTCAACGATTATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGTGAAGATGATGAGCGTGAAATTGTTGTTGCATATTTGAACCCTGGGGACTTT
TTCGGGGAAATGGGATTATTTGAGCAAAATCCACAACGTACTGCGGAAGTAAGAACCCGTGACGTATGTGAAATTGCTGA
AATTTCATATGATAATTTCCACGAAATTAGTAAACAATATCCTGACTTAAGTTATGCCGTATTTGCACAACTTGTTCGTC
GTTTAAAAAATACAACACGCAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCGCGTTGTTTAATTGAT
CTTTCAGCACAGCCTGAAGCGATGATCTTGCCAAACGGCCGTCAAATCCGCATTACTCGCCAAGAAATTGGTCGTATCGT
GGGTTGTTCCCGTGAAATGGTTGGTCGTGTTCTAAAAACACTTGAAGAACAAGGCATGATCGAAACCGACGGTAAAGCCA
TCCTTATATTTGATGTATCTTTGGAAGAATCTAATTTTTCTGAAGACGAACTAAGCACAGATGATGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077KYT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.304

97.458

0.89
  crp Vibrio cholerae strain A1552

48.293

86.864

0.419
  crp Haemophilus influenzae Rd KW20

48.705

81.78

0.398