Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BLJIH1_RS09425 Genome accession   NZ_AP022868
Coordinates   2227226..2229097 (-) Length   623 a.a.
NCBI ID   WP_069483965.1    Uniprot ID   -
Organism   Bifidobacterium longum strain Jih1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2222226..2234097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLJIH1_RS09410 (BLJIH1_18510) - 2222481..2223899 (-) 1419 WP_172476809.1 MFS transporter -
  BLJIH1_RS09415 (BLJIH1_18520) - 2223981..2225027 (+) 1047 WP_172476810.1 FAD:protein FMN transferase -
  BLJIH1_RS09420 (BLJIH1_18530) rcrQ 2225180..2227009 (-) 1830 WP_077385746.1 ABC transporter ATP-binding protein Regulator
  BLJIH1_RS09425 (BLJIH1_18540) rcrP 2227226..2229097 (-) 1872 WP_069483965.1 ABC transporter ATP-binding protein Regulator
  BLJIH1_RS09430 (BLJIH1_18550) - 2229284..2229805 (-) 522 WP_032684783.1 MarR family winged helix-turn-helix transcriptional regulator -
  BLJIH1_RS09435 (BLJIH1_18560) - 2230167..2230730 (+) 564 WP_172476811.1 BRO family protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 67959.57 Da        Isoelectric Point: 5.4567

>NTDB_id=79581 BLJIH1_RS09425 WP_069483965.1 2227226..2229097(-) (rcrP) [Bifidobacterium longum strain Jih1]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGKAAEGADIPA
EQLNRVKAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=79581 BLJIH1_RS09425 WP_069483965.1 2227226..2229097(-) (rcrP) [Bifidobacterium longum strain Jih1]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTACTCGACACCGAG
CCGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGTCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(60-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.183

100

0.49

Multiple sequence alignment