Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q9L40_RS06150 Genome accession   NZ_CP132190
Coordinates   212214..213218 (-) Length   334 a.a.
NCBI ID   WP_000568487.1    Uniprot ID   A0AAW4GXW9
Organism   Vibrio cholerae strain DRC187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 207214..218218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS06120 (Q9L40_06120) tolQ 207336..208019 (-) 684 WP_000123086.1 protein TolQ -
  Q9L40_RS06125 (Q9L40_06125) ybgC 208009..208416 (-) 408 WP_001091292.1 tol-pal system-associated acyl-CoA thioesterase -
  Q9L40_RS06130 (Q9L40_06130) ybgE 208585..208902 (-) 318 WP_113605580.1 cyd operon protein YbgE -
  Q9L40_RS06135 (Q9L40_06135) cydX 208895..209002 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  Q9L40_RS06140 (Q9L40_06140) cydB 209015..210151 (-) 1137 WP_000460766.1 cytochrome d ubiquinol oxidase subunit II -
  Q9L40_RS06145 (Q9L40_06145) cydA 210169..211755 (-) 1587 WP_305799364.1 cytochrome ubiquinol oxidase subunit I -
  Q9L40_RS06150 (Q9L40_06150) ruvB 212214..213218 (-) 1005 WP_000568487.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q9L40_RS06155 (Q9L40_06155) ruvA 213274..213888 (-) 615 WP_000580348.1 Holliday junction branch migration protein RuvA Machinery gene
  Q9L40_RS06160 (Q9L40_06160) ruvC 213981..214502 (-) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  Q9L40_RS06165 (Q9L40_06165) cysS 214590..215969 (-) 1380 WP_199368000.1 cysteine--tRNA ligase -
  Q9L40_RS06170 (Q9L40_06170) - 216115..216609 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  Q9L40_RS06175 (Q9L40_06175) lpxH 216650..217390 (+) 741 WP_305799363.1 UDP-2,3-diacylglucosamine diphosphatase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37338.85 Da        Isoelectric Point: 5.0532

>NTDB_id=795564 Q9L40_RS06150 WP_000568487.1 212214..213218(-) (ruvB) [Vibrio cholerae strain DRC187]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQYIVQRSAQCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=795564 Q9L40_RS06150 WP_000568487.1 212214..213218(-) (ruvB) [Vibrio cholerae strain DRC187]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAGGTGATTGATCGAGCGATTCGCCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTAAAGCAGCACAAATGCGCC
AAGAAGCCTTAGACCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTAGCAAACATAGTCGCCAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGTTAACCAACCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGTCCTATGGTGGAGGAAGTGCTCTATCCTGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCAGCGCGCTCAATCAAAATTGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACCCGGGCAGGTTCGCTGACGTCACCGCTACGTGACCGATTTGGGATTGTCCAACGTTTGGAATATTACAA
AGTTGCTGATTTGCAATACATAGTACAACGTAGTGCGCAGTGTCTCGGTCTTTCAATGGAGAGTGAAGGTGCGCTTGAAG
TGGCTCGCCGTGCGCGTGGAACCCCGCGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTGAAAGGG
GATGGGCACATTTGTGCACAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTACTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(186-259)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAW4GXW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.371

96.108

0.59
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.34

92.515

0.512
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494