Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYH66_RS06675 Genome accession   NZ_CP118816
Coordinates   1342594..1344993 (+) Length   799 a.a.
NCBI ID   WP_353419953.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337594..1349993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH66_RS06645 (PYH66_06605) - 1337766..1337951 (+) 186 WP_096541591.1 CsbD family protein -
  PYH66_RS06650 (PYH66_06610) - 1337988..1338149 (+) 162 WP_164715577.1 hypothetical protein -
  PYH66_RS06655 (PYH66_06615) - 1338417..1339430 (-) 1014 WP_155259722.1 LLM class flavin-dependent oxidoreductase -
  PYH66_RS06660 (PYH66_06620) - 1339644..1340789 (+) 1146 WP_353419982.1 cysteine desulfurase family protein -
  PYH66_RS06665 (PYH66_06625) mnmA 1340789..1341901 (+) 1113 WP_014613739.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYH66_RS06670 (PYH66_06630) - 1341917..1342591 (+) 675 WP_096541587.1 tetratricopeptide repeat protein -
  PYH66_RS06675 (PYH66_06635) recD2 1342594..1344993 (+) 2400 WP_353419953.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYH66_RS06680 (PYH66_06640) alaS 1345239..1347872 (+) 2634 WP_353419954.1 alanine--tRNA ligase -
  PYH66_RS06685 (PYH66_06645) - 1347932..1348204 (+) 273 WP_096597089.1 IreB family regulatory phosphoprotein -
  PYH66_RS06690 (PYH66_06650) ruvX 1348197..1348623 (+) 427 Protein_1282 Holliday junction resolvase RuvX -
  PYH66_RS06695 (PYH66_06655) - 1348637..1348969 (+) 333 WP_019165167.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90478.84 Da        Isoelectric Point: 4.6011

>NTDB_id=795564 PYH66_RS06675 WP_353419953.1 1342594..1344993(+) (recD2) [Staphylococcus delphini strain 7058]
MENPTLFDHTFIKGTVEMILFHNADNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQVVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNKLGENAIHDILKDESVIERVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEETCIKQG
HTYLPQEALINETIQLLSQAKASSIDYDTMTQILAELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIRHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDVVPIDAQFVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQDILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLTQYFNPEDSEDEVDTDTDSAAFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=795564 PYH66_RS06675 WP_353419953.1 1342594..1344993(+) (recD2) [Staphylococcus delphini strain 7058]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAAATGATTTTGTTTCATAATGCGGACAACCA
TTATACAGTGCTTAAAGTGGAAATTGAAGAAACAAATGGCGACTTTGATGATATGGCAACAGTGGTTGGATACTTTCCGA
ATATGGTAGAAGATGAGACGTACACTTTTAAAGGTCAAGTCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCAGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGATGCCGTTATTGCGTATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCAGAATCCATTGTCAATAAGTTAGGTGAAAATGCGATTCATGACATTTTGAAAGACGAATCTGTCATTGAAC
GGGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTGGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACGCTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAACAAAGCTGACCAACTGGCCCAACAGC
TCGGTATTCATCCTGAGCATCCCGATCGTTTGAAAGCCGGATTACTTTATTTAGTTGAAGAGACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAAGCCAAAGCATCAAGTATCGACTA
TGACACCATGACGCAAATTTTGGCTGAATTAGTTGAAGAAAAGCGTCTAGTCAATCAAGATGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGCGAACATTTAACAACATTTGAT
GCGTCTGATATCCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTGCATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCTATCCGACATAAAGTTATGCTCCTCACGGGTGGACCAGGTACAGGAAAGACAACTGTCATTAAAGGGATTG
TCCAGTTATACGCAGAAATTCATGGCATCTCATTAGATTATGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCAACAGGGTTAGAAGCAATGACGATTCACCGCTTAATAGG
GTGGAATCAAGATACGAAACCACAAGACAAGTTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAGATGTCTA
TGGTGGACACTTGGCTATTCCATCAATTTATGGATGTAGTGCCTATCGATGCACAATTCGTATTAGTCGGTGATGAAGAC
CAGCTCCCATCAGTTGGGCCCGGACAAGTTTTTAAAGATCTCATTGACGCGAATGTATTACCGCGCATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGCATGAAACTCGGTGAAAAAGTCGACATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTTGTAGAAAAAGTGGTCAACAATGCT
GTGCAAAAAGGCTATACGATGGCAGATATTCAAGTGCTCGCACCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTTAA
CCAAATTTTACAAGACATTTTGAATCCATTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTCCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCGAACGACAATGTGTTTAATGGCGATATTGGTGTCATTGTCGGAATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTCGATTATGATGGGAATGAGATTACTTATTTACGCTC
TGATTTGACGGAATTGACCCATGCCTATTGTACTTCGATTCATAAAGCACAAGGTTCAGAGTTTCCGATCGTTATTATGC
CCATTGTTAAGCAATATTTTAGAATGTTGCAAAAGCCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTAGGTGATGCGGATGCTTTTAATATCGGATTAGCGACTGCAGGTCAAACGCGGTTAACGCAATTACAAACGTTCTT
AACGCAATATTTTAATCCGGAAGATAGTGAGGATGAAGTAGATACTGATACGGATTCTGCTGCGTTTATTTTAACTGAAG
CGACTATGTTTAAAATTCACCCGATGATTAATATGGGTGAAGTCACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

AAA domain (AAA_30)

(339-546)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.937

99.75

0.498