Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q8X46_RS01940 Genome accession   NZ_CP132063
Coordinates   415951..416418 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain QML220601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410951..421418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X46_RS01915 (Q8X46_01915) rpsG 411092..411562 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  Q8X46_RS01920 (Q8X46_01920) fusA 411659..413773 (+) 2115 WP_000124700.1 elongation factor G -
  Q8X46_RS01925 (Q8X46_01925) tuf 413844..415028 (+) 1185 WP_000031783.1 elongation factor Tu -
  Q8X46_RS01930 (Q8X46_01930) bfd 415211..415405 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  Q8X46_RS01935 (Q8X46_01935) bfr 415478..415954 (+) 477 WP_000675515.1 bacterioferritin -
  Q8X46_RS01940 (Q8X46_01940) pilD 415951..416418 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  Q8X46_RS01945 (Q8X46_01945) rpsJ 416797..417108 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  Q8X46_RS01950 (Q8X46_01950) rplC 417141..417770 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  Q8X46_RS01955 (Q8X46_01955) rplD 417781..418386 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  Q8X46_RS01960 (Q8X46_01960) rplW 418383..418685 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  Q8X46_RS01965 (Q8X46_01965) rplB 418703..419524 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  Q8X46_RS01970 (Q8X46_01970) rpsS 419541..419819 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  Q8X46_RS01975 (Q8X46_01975) rplV 419834..420166 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  Q8X46_RS01980 (Q8X46_01980) rpsC 420184..420885 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  Q8X46_RS01985 (Q8X46_01985) rplP 420898..421308 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=795298 Q8X46_RS01940 WP_000339836.1 415951..416418(-) (pilD) [Escherichia coli strain QML220601]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=795298 Q8X46_RS01940 WP_000339836.1 415951..416418(-) (pilD) [Escherichia coli strain QML220601]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361