Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYH72_RS06120 Genome accession   NZ_CP118782
Coordinates   1300717..1303116 (+) Length   799 a.a.
NCBI ID   WP_353418670.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1295717..1308116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH72_RS06090 (PYH72_06085) - 1295900..1296085 (+) 186 WP_096545141.1 CsbD family protein -
  PYH72_RS06095 (PYH72_06090) - 1296122..1296283 (+) 162 WP_019165159.1 hypothetical protein -
  PYH72_RS06100 (PYH72_06095) - 1296540..1297553 (-) 1014 WP_353418669.1 LLM class flavin-dependent oxidoreductase -
  PYH72_RS06105 (PYH72_06100) - 1297767..1298912 (+) 1146 WP_353418688.1 cysteine desulfurase family protein -
  PYH72_RS06110 (PYH72_06105) mnmA 1298912..1300024 (+) 1113 WP_014613739.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYH72_RS06115 (PYH72_06110) - 1300040..1300714 (+) 675 WP_096554546.1 tetratricopeptide repeat protein -
  PYH72_RS06120 (PYH72_06115) recD2 1300717..1303116 (+) 2400 WP_353418670.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYH72_RS06125 (PYH72_06120) alaS 1303362..1305995 (+) 2634 WP_096554550.1 alanine--tRNA ligase -
  PYH72_RS06130 (PYH72_06125) - 1306055..1306327 (+) 273 WP_014613743.1 IreB family regulatory phosphoprotein -
  PYH72_RS06135 (PYH72_06130) ruvX 1306320..1306747 (+) 428 Protein_1171 Holliday junction resolvase RuvX -
  PYH72_RS06140 (PYH72_06135) - 1306761..1307093 (+) 333 WP_019165167.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90311.68 Da        Isoelectric Point: 4.5702

>NTDB_id=795194 PYH72_RS06120 WP_353418670.1 1300717..1303116(+) (recD2) [Staphylococcus delphini strain 7072]
MENPTLFDHTFIKGTVEMILFHNAENHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQIVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNTLGENAIHDILKDESVIEQVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIQPEHPDRLKAGLLYLVEETCIKQG
HTYLPQEALINETIQLLSQAKASSIDYDTMTQILAELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLMQYFNPEDTDDKTDTDTDSAAFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=795194 PYH72_RS06120 WP_353418670.1 1300717..1303116(+) (recD2) [Staphylococcus delphini strain 7072]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACTGTAGAAATGATTTTGTTTCATAATGCGGAGAACCA
TTACACAGTGCTTAAAGTGGAGATAGAAGAAACAAATGGCGACTTTGATGATATGGCAACAGTGGTTGGATACTTTCCGA
ATATGGTGGAAGATGAGACGTATACTTTTAAAGGTCAAATCGTGCAACATGCAAGATATGGCCAGCAATTAAAAGCAGAG
ACGTTTCAAAAAGAAATTCCTCATACTAAAGATGCCGTTATTGCGTATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCAGAATCCATTGTCAATACGCTAGGTGAAAATGCAATTCATGATATTTTGAAAGACGAATCAGTCATTGAAC
AGGTGCCTAAACTGTCTAAGGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTCGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACGTTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGATATTAAAGGGGTCGGTTTTAATAAAGCAGACCAACTGGCCCAACAGC
TCGGTATTCAACCAGAGCATCCCGATCGTTTGAAAGCCGGGTTACTTTATTTAGTTGAAGAGACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAAGCCAAAGCATCAAGTATCGACTA
TGACACCATGACACAAATTTTGGCTGAATTGGTAGAAGAAAAGCGTCTAGTCAATCAAGATGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGCGAACATTTAACAACATTTGAT
GCGTCAGATATTCAATTACATATCGGGGAAATTGAAGAGGTCAATGAAGTACATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCCATCCAACATAAAGTGATGCTCCTCACGGGTGGACCAGGTACAGGAAAGACAACTGTTATTAAAGGGATTG
TACAGTTATACGCAGAAATTCATGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACCGGAAGAGCTTCTAAACGTTTACATGAAGCAACAGGGTTAGAAGCAATGACGATTCACCGCTTAATAGG
GTGGAACCAAGATACGAAACCGCAAGACAAGTTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAGATGTCTA
TGGTGGATACTTGGCTATTCCATCAATTTATGGATGCAGTGCCAATTGATGCACAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTCCCATCAGTTGGCCCCGGACAAGTATTTAAAGATCTCATTGATGCGAATGTATTACCGCGTATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCACATCGCATGAAACTCGGTGAAAAAGTCGATATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTTGTAGAAAAAGTGGTCAACAATGCT
GTGCAAAAAGGCTATACGATGGCAGATATTCAAGTGCTCGCACCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTTAA
CCAAATTTTACAAGGCATTTTGAATCCATTGTCAGATGAATCGCAACGTGAGATTGAATTTGGTGATGTCCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCGAACGACAATGTGTTTAATGGCGATATTGGTGTCATTGTCGGAATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTCGATTATGATGGGAATGAAATTACTTATTTACGCTC
TGATTTGACGGAATTGACCCATGCTTATTGTACTTCGATTCATAAAGCACAAGGTTCAGAGTTTCCGATTGTCATCATGC
CTATTGTGAAGCAGTATTTTAGAATGTTGCAAAAGCCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTTGGTGATGCAGATGCTTTTAATATCGGGTTAGCGACTGCCGGTCAAACGCGGTTAACGCAATTACAAACGTTCTT
AATGCAATATTTTAATCCGGAAGACACTGATGATAAAACAGATACTGATACGGATTCGGCTGCGTTTATTTTAACTGAAG
CGACTATGTTTAAAATTCACCCGATGATTAATATGGGTGAAGTCACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.5

100

0.496