Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PWP91_RS12095 Genome accession   NZ_CP118738
Coordinates   2408920..2409858 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis strain P-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2403920..2414858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS12070 (PWP91_12070) frr 2404038..2404595 (-) 558 WP_004254618.1 ribosome recycling factor -
  PWP91_RS12075 (PWP91_12075) pyrH 2404807..2405523 (-) 717 WP_021464089.1 UMP kinase -
  PWP91_RS12080 (PWP91_12080) - 2405608..2406060 (-) 453 WP_012898517.1 hypothetical protein -
  PWP91_RS12085 (PWP91_12085) - 2406194..2407381 (-) 1188 WP_274998596.1 acetate kinase -
  PWP91_RS12090 (PWP91_12090) - 2407538..2408725 (-) 1188 WP_023188635.1 acetate kinase -
  PWP91_RS12095 (PWP91_12095) comYH 2408920..2409858 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  PWP91_RS12100 (PWP91_12100) - 2409946..2410197 (-) 252 WP_004254583.1 DUF3165 family protein -
  PWP91_RS12105 (PWP91_12105) typA 2410298..2412130 (-) 1833 WP_025016832.1 translational GTPase TypA -
  PWP91_RS13035 - 2412318..2412776 (-) 459 WP_338084805.1 hypothetical protein -
  PWP91_RS12115 (PWP91_12115) - 2412778..2413182 (-) 405 WP_033900784.1 hypothetical protein -
  PWP91_RS12120 (PWP91_12120) - 2413195..2413821 (-) 627 WP_058203734.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=794822 PWP91_RS12095 WP_012898520.1 2408920..2409858(-) (comYH) [Lactococcus lactis strain P-1]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=794822 PWP91_RS12095 WP_012898520.1 2408920..2409858(-) (comYH) [Lactococcus lactis strain P-1]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGATCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487