Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX61_RS07700 Genome accession   NZ_CP132029
Coordinates   1518764..1519537 (-) Length   257 a.a.
NCBI ID   WP_304984500.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4b     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513764..1524537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX61_RS07665 - 1514017..1514787 (-) 771 WP_000473699.1 isoprenyl transferase -
  QFX61_RS07670 frr 1515160..1515714 (-) 555 WP_001280004.1 ribosome recycling factor -
  QFX61_RS07675 pyrH 1515733..1516455 (-) 723 WP_000057330.1 UMP kinase -
  QFX61_RS07680 tsf 1516592..1517473 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX61_RS07685 - 1517508..1517621 (-) 114 WP_001789890.1 hypothetical protein -
  QFX61_RS07690 rpsB 1517655..1518422 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX61_RS07695 - 1518621..1518713 (-) 93 WP_001790530.1 hypothetical protein -
  QFX61_RS07700 codY 1518764..1519537 (-) 774 WP_304984500.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX61_RS07705 hslU 1519562..1520965 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX61_RS07710 hslV 1521031..1521576 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX61_RS07715 xerC 1521573..1522469 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX61_RS07720 trmFO 1522886..1524193 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28741.06 Da        Isoelectric Point: 5.7568

>NTDB_id=794820 QFX61_RS07700 WP_304984500.1 1518764..1519537(-) (codY) [Staphylococcus aureus strain 2.4b]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKENFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=794820 QFX61_RS07700 WP_304984500.1 1518764..1519537(-) (codY) [Staphylococcus aureus strain 2.4b]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAATTTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428