Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PWP91_RS01670 Genome accession   NZ_CP118738
Coordinates   325221..326009 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 320221..331009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS01645 (PWP91_01645) - 320588..321379 (+) 792 WP_033899177.1 DNA/RNA non-specific endonuclease -
  PWP91_RS01650 (PWP91_01650) - 321545..321754 (+) 210 WP_010905160.1 hypothetical protein -
  PWP91_RS01655 (PWP91_01655) - 321766..322005 (+) 240 WP_003129719.1 hypothetical protein -
  PWP91_RS01660 (PWP91_01660) - 322201..323784 (+) 1584 WP_058202909.1 APC family permease -
  PWP91_RS01665 (PWP91_01665) - 323853..325067 (+) 1215 WP_058204219.1 pyridoxal phosphate-dependent aminotransferase -
  PWP91_RS01670 (PWP91_01670) codY 325221..326009 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PWP91_RS01675 (PWP91_01675) gatC 326575..326880 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  PWP91_RS01680 (PWP91_01680) gatA 326880..328340 (+) 1461 WP_274998736.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  PWP91_RS01685 (PWP91_01685) - 328344..328946 (+) 603 WP_274998737.1 NUDIX hydrolase -
  PWP91_RS01690 (PWP91_01690) gatB 328986..330419 (+) 1434 WP_081213315.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=794790 PWP91_RS01670 WP_003129722.1 325221..326009(+) (codY) [Lactococcus lactis strain P-1]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=794790 PWP91_RS01670 WP_003129722.1 325221..326009(+) (codY) [Lactococcus lactis strain P-1]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462