Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PXH68_RS05595 Genome accession   NZ_CP118733
Coordinates   1204626..1205465 (-) Length   279 a.a.
NCBI ID   WP_248028368.1    Uniprot ID   A0AA96ZYD3
Organism   Streptococcus suivaginalis strain 29896     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1199626..1210465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS05575 (PXH68_05575) - 1199821..1200123 (+) 303 WP_024384807.1 hypothetical protein -
  PXH68_RS05580 (PXH68_05580) - 1200144..1200410 (-) 267 WP_248028366.1 DUF2087 domain-containing protein -
  PXH68_RS05585 (PXH68_05585) pheT 1200465..1202864 (-) 2400 WP_248028367.1 phenylalanine--tRNA ligase subunit beta -
  PXH68_RS05590 (PXH68_05590) pheS 1203331..1204374 (-) 1044 WP_205031236.1 phenylalanine--tRNA ligase subunit alpha -
  PXH68_RS05595 (PXH68_05595) endA 1204626..1205465 (-) 840 WP_248028368.1 DNA/RNA non-specific endonuclease Machinery gene
  PXH68_RS05600 (PXH68_05600) - 1205495..1205686 (-) 192 WP_172043436.1 DNA-directed RNA polymerase subunit beta -
  PXH68_RS05605 (PXH68_05605) murA 1205679..1206962 (-) 1284 WP_248028369.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PXH68_RS05610 (PXH68_05610) - 1206977..1207198 (-) 222 WP_158456954.1 DUF1146 family protein -
  PXH68_RS05615 (PXH68_05615) - 1207299..1207715 (-) 417 WP_158456956.1 F0F1 ATP synthase subunit epsilon -
  PXH68_RS05620 (PXH68_05620) atpD 1207725..1209131 (-) 1407 WP_248028370.1 F0F1 ATP synthase subunit beta -
  PXH68_RS05625 (PXH68_05625) - 1209151..1210029 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30144.27 Da        Isoelectric Point: 6.3434

>NTDB_id=794629 PXH68_RS05595 WP_248028368.1 1204626..1205465(-) (endA) [Streptococcus suivaginalis strain 29896]
MAKKNVKKQAMSLLSLIATIVVVGGGYFLNNSSSNNTASYSYYVNQSQASESTPSEELASSVLTESVKKQLGNSIDWNGA
GAFLVNGNKTDLDASVSSLPYADTKTKTVQGETVPTVANALMTKATRQYKDRNETGNGATSWTPAGWHQVHDLAGEYDHA
VDRGHLLGYAIIGGLSSFDASTSNPQNIAVQTAWSNQANDQTSTGQNYFETLVRKALDKNKRIRYRVTLIYAQENDLVAV
GRQIEAKSSDGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=794629 PXH68_RS05595 WP_248028368.1 1204626..1205465(-) (endA) [Streptococcus suivaginalis strain 29896]
ATGGCAAAGAAAAATGTAAAAAAACAGGCCATGAGCCTACTTAGTTTGATAGCAACTATTGTTGTAGTAGGCGGAGGCTA
TTTTTTAAATAATTCGAGTAGCAATAATACAGCTAGTTATTCGTACTATGTGAATCAATCGCAGGCAAGTGAGTCTACCC
CGAGTGAGGAATTAGCTAGTTCTGTTTTAACAGAGAGTGTAAAAAAACAACTGGGCAATTCGATTGACTGGAATGGAGCT
GGCGCTTTTCTTGTCAATGGGAATAAGACTGACCTAGATGCTTCTGTGTCCAGCCTGCCTTATGCAGATACCAAAACTAA
AACAGTCCAGGGAGAAACAGTTCCAACGGTAGCCAATGCCTTGATGACTAAAGCAACCAGACAATACAAGGACCGTAATG
AGACTGGAAATGGTGCTACATCCTGGACTCCAGCAGGTTGGCATCAGGTTCATGATTTAGCTGGAGAATATGACCATGCT
GTGGATCGTGGGCACTTGCTAGGATATGCAATCATTGGCGGTCTATCTAGCTTTGATGCTTCAACCAGCAATCCTCAAAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAACCTTGGTAC
GAAAAGCATTAGACAAGAACAAACGTATCCGATACCGTGTCACCTTGATCTATGCCCAAGAGAATGATTTAGTCGCAGTT
GGTCGACAAATTGAAGCTAAATCTTCTGATGGTAGCTTAGAGTTTAATGTATTTGTTCCCAATGTACAGAGCGGCCTCAG
CATTAACTACCATAGTGGTGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.667

91.398

0.609
  endA Streptococcus pneumoniae D39

66.667

91.398

0.609
  endA Streptococcus pneumoniae R6

66.667

91.398

0.609
  endA Streptococcus pneumoniae TIGR4

66.667

91.398

0.609