Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PWO00_RS23930 Genome accession   NZ_CP118718
Coordinates   4575347..4577704 (-) Length   785 a.a.
NCBI ID   WP_071270520.1    Uniprot ID   -
Organism   Priestia aryabhattai strain G5MAi6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4570347..4582704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO00_RS23910 (PWO00_23905) alaS 4570656..4573289 (-) 2634 WP_275036535.1 alanine--tRNA ligase -
  PWO00_RS23915 (PWO00_23910) - 4573678..4574739 (-) 1062 WP_071270523.1 AI-2E family transporter -
  PWO00_RS23920 (PWO00_23915) - 4574854..4574988 (-) 135 WP_013059291.1 YrzQ family protein -
  PWO00_RS23925 (PWO00_23920) - 4575014..4575205 (-) 192 WP_013059292.1 hypothetical protein -
  PWO00_RS23930 (PWO00_23925) recD2 4575347..4577704 (-) 2358 WP_071270520.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PWO00_RS23935 (PWO00_23930) - 4577729..4578388 (-) 660 WP_013085089.1 tetratricopeptide repeat protein -
  PWO00_RS23940 (PWO00_23935) mnmA 4578546..4579658 (-) 1113 WP_028410593.1 tRNA 2-thiouridine(34) synthase MnmA -
  PWO00_RS23945 (PWO00_23940) - 4579765..4580907 (-) 1143 WP_221814322.1 cysteine desulfurase family protein -
  PWO00_RS23950 (PWO00_23945) cymR 4580931..4581347 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88803.25 Da        Isoelectric Point: 5.0673

>NTDB_id=794562 PWO00_RS23930 WP_071270520.1 4575347..4577704(-) (recD2) [Priestia aryabhattai strain G5MAi6]
MNEELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGVVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=794562 PWO00_RS23930 WP_071270520.1 4575347..4577704(-) (recD2) [Priestia aryabhattai strain G5MAi6]
ATGAACGAAGAACTAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTATTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAATTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCCGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAGGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGGGCTGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAAAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGGTAGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAATTAGAAGAGCGGTTAGACGTTCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACTGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTTTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCCCCTACGGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACAGGCAAGCAGAAGGATCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTCAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCCGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAACGAAGT
AACTTATACAAAACAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAAGGAAGTGAATTTC
CCATCGTTGTGCTTCCAATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACGGCTGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGAGAAGACGAAGCGTTTCAGCTTGGAGTTAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCTGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

64.066

99.618

0.638