Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PWJ66_RS15695 Genome accession   NZ_CP118714
Coordinates   3197224..3199656 (-) Length   810 a.a.
NCBI ID   WP_274991456.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain G5.M11b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3192224..3204656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWJ66_RS15685 (PWJ66_15630) corA 3194235..3195200 (-) 966 WP_036127283.1 magnesium/cobalt transporter CorA -
  PWJ66_RS15690 (PWJ66_15635) hpaB 3195667..3197100 (-) 1434 WP_274991455.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  PWJ66_RS15695 (PWJ66_15640) recD2 3197224..3199656 (-) 2433 WP_274991456.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PWJ66_RS15700 (PWJ66_15645) hisA 3199845..3200612 (+) 768 WP_150907095.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  PWJ66_RS15705 (PWJ66_15650) - 3200609..3200896 (+) 288 WP_008181526.1 hypothetical protein -
  PWJ66_RS15710 (PWJ66_15655) - 3201167..3201898 (+) 732 WP_036149211.1 GTP pyrophosphokinase -
  PWJ66_RS15715 (PWJ66_15660) - 3201973..3203415 (-) 1443 WP_274991457.1 MDR family MFS transporter -
  PWJ66_RS15720 (PWJ66_15665) - 3203606..3204265 (-) 660 WP_036149212.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90824.38 Da        Isoelectric Point: 4.9642

>NTDB_id=794507 PWJ66_RS15695 WP_274991456.1 3197224..3199656(-) (recD2) [Lysinibacillus fusiformis strain G5.M11b]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKILTLVERNSKA
EHFSKDEIRKAIGETEELLHVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKDLTSKTTDRSFIKSSVDQVGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVIVEVEAVPVKQEVVQEAAIEDPKLTVEIAPYIHPMIGMD
DVSPYDFLEK

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=794507 PWJ66_RS15695 WP_274991456.1 3197224..3199656(-) (recD2) [Lysinibacillus fusiformis strain G5.M11b]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATTGTCTCTATTTTTCATAACAC
ACAAAATATGTATTCCATTATACGAGTGAAAATTCAAGAGACAAACTTACAGTATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTGAAACAGCATCCTAAATATGGTGCACAA
TTCCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATCGGGAAAAAAACGGCTGAAACCATTGTTGAAAAACTAGGTGCTAATGCATTACGTCTTATTTTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATCCATCGCACGATTGAGCAAAATCTTGGTTTA
GAACGGGTAATGATCCAGCTAAATGAATGGGGCTTTGGTCCACAGCTTGGAATGAAAATATATCAAACCTATCGAACTGA
AGCCATTGAATTACTAACTGAAAACCCATATCGCTTAATAGAAGATGTGGAAGGGGTAGGGTTCTTTCGAGCAGATGAGC
TTGGTGCCAAATTAGGCATTACCGGAAAACATCCTGACCGTGTCAAAGCAGCGATTTTCCATGTTTTAAATACGGCTGCA
CTATCTGACGGGCATGTTTATCTAGATGCGGAGCATGTTCTACCACTTGTAAAGGAAATGCTTGAACAAAGCCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATCGAGCTACGAGAAGAAGGCAAAATTTGTGGGGAAGAAACAAGAT
TATATTTACCCTCTCTTTATTTTTCTGAGGTGGGAATTGCTTCTAAAATATTGACGCTTGTTGAACGAAATAGCAAGGCT
GAGCATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCATGTGACTTATGCTGAAACACA
AGCAAATGCCATTGAACAGGCTTTAAATTCAGCCGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTTTATGCGAAGCTTCATGGCTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCTATTATCCTTTGTGCACCCACTGGGCGAGCTGCGAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACTAT
TCATCGTTTACTCGGCTTTACTGGTCAAGAAAAAGAAGAAGAGACTGAACGAGAGGTCACAGGTAAGCTTATTATTGTAG
ATGAAATGTCAATGGTGGATACGTGGCTTGCTCATCAATTATTAAAAGCTTTACATGAGGACGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAATTACCGCCTGTAGGACCAGGACAGGTGTTGAAGGATTTATTAGCATCCAAGCAGCTTCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGCTCTACAATTATTGAACTAGCCCATCAAATCAAAAAAGGAACCATTC
CGAAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCATCCGTCGATCAGGTTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCTGTTGCTAAGGGGCAAGAAATTCGTAATATACAAGTATTAGCTCCGATGTATAAAGGTCCTGCTGG
CATTGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCTAATGATACAGGGACAAGAAAGGAACTTGTCTTTGGGG
ACGTAACATATCGAATAAAGGATAAAGTTCTGCAGCTCGTCAATCAGCCTGAAAGTAATGTTTTTAATGGTGATATGGGA
GAAGTCATTAGTATTATAAAGGCAAAAGAGACAGTAGAAAAACAAGATTTACTGATTGTCTCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGTGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCTAAAATGCTGCGGCGTAATCTTTTGTACACAGGTATTACAAGAGCG
AAAAACTTTTTGATTTTATGTGGGGAACCCGATGTCCTGGCAGATGGTTTGCAGCGTACAGACGATTTACAGCGTTTTAC
TTCGTTGCGCGCTCGATTAAATCCAATGGATGTCGACGAAGTCATTGTTGAAGTCGAGGCAGTTCCAGTAAAACAAGAGG
TTGTGCAAGAAGCGGCTATCGAGGACCCTAAATTAACAGTAGAAATAGCTCCTTATATTCATCCAATGATTGGTATGGAT
GATGTCTCCCCCTATGATTTTTTGGAAAAGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.147

100

0.525