Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QQN98_RS01960 Genome accession   NZ_CP132019
Coordinates   407950..408714 (-) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain JCH767     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 402950..413714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQN98_RS01950 (QQN98_01950) nikR 406741..407142 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QQN98_RS01955 (QQN98_01955) nikE 407147..407953 (-) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  QQN98_RS01960 (QQN98_01960) amiE 407950..408714 (-) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  QQN98_RS01965 (QQN98_01965) nikC 408714..409547 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  QQN98_RS01970 (QQN98_01970) nikB 409544..410488 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  QQN98_RS01975 (QQN98_01975) nikA 410488..412062 (-) 1575 WP_000953368.1 nickel ABC transporter substrate-binding protein -
  QQN98_RS01980 (QQN98_01980) acpT 412173..412760 (-) 588 WP_000285781.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=794437 QQN98_RS01960 WP_001136198.1 407950..408714(-) (amiE) [Escherichia coli strain JCH767]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=794437 QQN98_RS01960 WP_001136198.1 407950..408714(-) (amiE) [Escherichia coli strain JCH767]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402