Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PUN47_RS14085 Genome accession   NZ_CP118599
Coordinates   3014384..3015019 (+) Length   211 a.a.
NCBI ID   WP_338129523.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 10M-VF     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3009384..3020019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS14065 (PUN47_14065) - 3009753..3010415 (+) 663 WP_202651268.1 hypothetical protein -
  PUN47_RS14070 (PUN47_14070) - 3010471..3012780 (+) 2310 WP_274888746.1 Tex family protein -
  PUN47_RS14075 (PUN47_14075) - 3012862..3013332 (-) 471 WP_020329343.1 hypothetical protein -
  PUN47_RS14080 (PUN47_14080) bioH 3013461..3014231 (-) 771 WP_202651414.1 pimeloyl-ACP methyl ester esterase BioH -
  PUN47_RS14085 (PUN47_14085) comF 3014384..3015019 (+) 636 WP_338129523.1 phosphoribosyltransferase family protein Machinery gene
  PUN47_RS14090 (PUN47_14090) nfuA 3015120..3015707 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  PUN47_RS14095 (PUN47_14095) nudE 3015853..3016401 (+) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  PUN47_RS14100 (PUN47_14100) cysQ 3016425..3017252 (+) 828 WP_032080325.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PUN47_RS14105 (PUN47_14105) - 3017282..3018040 (-) 759 WP_202651260.1 type II secretion system protein N -
  PUN47_RS14110 (PUN47_14110) - 3018040..3018546 (-) 507 WP_024373337.1 type II secretion system protein M -
  PUN47_RS14115 (PUN47_14115) gspL 3018556..3019767 (-) 1212 WP_202651258.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23861.39 Da        Isoelectric Point: 8.7674

>NTDB_id=793866 PUN47_RS14085 WP_338129523.1 3014384..3015019(+) (comF) [Vibrio fluvialis strain 10M-VF]
MPLESHTTQSLCGACLDWYAPTTRCTRCGLPCETATEQCGQCLTSPPPWHKLYCLGDYRFPLNQSVHQLKYQRQFWQARP
LAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQIAQQLGSQYQPRLFSRRLATPTQQGLNKAQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=793866 PUN47_RS14085 WP_338129523.1 3014384..3015019(+) (comF) [Vibrio fluvialis strain 10M-VF]
TTGCCCCTTGAATCGCATACCACGCAGAGCTTGTGCGGCGCATGCCTCGACTGGTACGCACCAACCACGCGCTGCACTCG
CTGTGGCCTGCCTTGTGAAACCGCCACCGAGCAGTGTGGCCAATGCCTGACATCGCCTCCGCCGTGGCACAAGCTCTATT
GTTTGGGCGATTACCGTTTTCCGCTCAACCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCGGCCG
CTGGCCGGATTGTTAGCCCCAAGAATTGTATCACCCGCCCCACTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGC
CTGGCGCGGTTTCAATCAAAGTGATGTTTTGGCGCGTCAAATTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGT
TTTCCCGTCGTCTGGCTACCCCGACGCAGCAAGGCCTGAACAAAGCTCAGCGACGGCGGAATCTCAACCAAGCTTTTGTC
TTGAACAGTGCGCCGAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

63.981

100

0.64
  comF Vibrio campbellii strain DS40M4

52.217

96.209

0.502