Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW26_RS17305 Genome accession   NZ_CP118596
Coordinates   3684776..3685501 (+) Length   241 a.a.
NCBI ID   WP_274878366.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3679776..3690501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS17290 - 3680908..3683229 (+) 2322 WP_017189965.1 Tex family protein -
  PWW26_RS17295 - 3683333..3683797 (-) 465 WP_009698973.1 hypothetical protein -
  PWW26_RS17300 bioH 3683927..3684691 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW26_RS17305 comF 3684776..3685501 (+) 726 WP_274878366.1 ComF family protein Machinery gene
  PWW26_RS17310 nfuA 3685599..3686183 (+) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW26_RS17315 nudE 3686359..3686925 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWW26_RS17320 cysQ 3686973..3687800 (+) 828 WP_274878367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW26_RS17325 - 3688090..3688851 (-) 762 WP_005448490.1 type II secretion system protein N -
  PWW26_RS17330 - 3688853..3689344 (-) 492 WP_005448492.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27654.72 Da        Isoelectric Point: 8.2958

>NTDB_id=793816 PWW26_RS17305 WP_274878366.1 3684776..3685501(+) (comF) [Vibrio harveyi strain fish10]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSALTQLLAERIEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793816 PWW26_RS17305 WP_274878366.1 3684776..3685501(+) (comF) [Vibrio harveyi strain fish10]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTGCGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCATATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

95.021

100

0.95
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473