Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7571_RS01620 Genome accession   NZ_CP131885
Coordinates   345242..345733 (+) Length   163 a.a.
NCBI ID   WP_280010063.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2008S11-069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340242..350733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7571_RS01585 (Q7571_01590) - 340250..342355 (-) 2106 WP_001117590.1 HD domain-containing protein -
  Q7571_RS01590 (Q7571_01595) - 342395..342525 (-) 131 Protein_304 hypothetical protein -
  Q7571_RS01595 (Q7571_01600) rpoZ 342564..342842 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Q7571_RS01600 (Q7571_01605) gmk 342915..343544 (-) 630 WP_000015937.1 guanylate kinase -
  Q7571_RS01605 (Q7571_01610) ispH 343667..344617 (+) 951 WP_000407066.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7571_RS01610 (Q7571_01615) - 344630..344881 (-) 252 Protein_308 hypothetical protein -
  Q7571_RS01615 (Q7571_01620) - 344787..345227 (+) 441 WP_024436453.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q7571_RS01620 (Q7571_01625) pilV 345242..345733 (+) 492 WP_280010063.1 type IV pilus modification protein PilV Machinery gene
  Q7571_RS01625 (Q7571_01630) - 345726..346640 (+) 915 WP_272257233.1 PilW family protein -
  Q7571_RS01630 (Q7571_01635) - 346637..347326 (+) 690 WP_342255297.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17324.78 Da        Isoelectric Point: 5.1026

>NTDB_id=793745 Q7571_RS01620 WP_280010063.1 345242..345733(+) (pilV) [Acinetobacter baumannii strain 2008S11-069]
MITSQKGAGLMEVLVALLLLSIAVLGFVALQVRAIAASTEAGQNIQAINIARDLAERMRVNRTGLNSYVDLSEGETLTDC
SSGFCSAANMAKYDYAQVKQRATDLGMRLVVLNCQGSTLTRQCIYVAWGGTTATDGSSGSNCTNGTAYVPDAKCIIMEVY
NHD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=793745 Q7571_RS01620 WP_280010063.1 345242..345733(+) (pilV) [Acinetobacter baumannii strain 2008S11-069]
ATGATAACATCTCAAAAAGGTGCTGGTTTGATGGAGGTGCTTGTTGCATTACTTTTATTGAGCATTGCTGTACTGGGTTT
TGTTGCTTTACAAGTACGAGCAATTGCTGCAAGCACTGAAGCAGGTCAGAACATTCAAGCAATCAATATAGCCCGAGATT
TAGCAGAGCGTATGCGTGTGAACCGAACTGGTTTAAATAGCTATGTAGATCTTAGCGAAGGCGAAACATTAACAGACTGT
TCTTCTGGGTTTTGTAGTGCTGCTAATATGGCGAAATATGATTATGCTCAGGTTAAACAACGTGCTACAGACTTAGGAAT
GAGGCTTGTGGTGTTGAATTGCCAAGGCTCTACGTTAACTCGTCAATGCATATATGTAGCATGGGGCGGGACAACAGCTA
CAGATGGAAGTAGTGGTTCAAATTGTACTAATGGCACAGCCTATGTACCTGATGCCAAATGTATCATTATGGAGGTTTAC
AACCATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

40.113

100

0.436
  pilV Acinetobacter baylyi ADP1

37.5

100

0.405