Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW24_RS02830 Genome accession   NZ_CP118590
Coordinates   575948..576673 (-) Length   241 a.a.
NCBI ID   WP_152163865.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570948..581673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW24_RS02805 - 572105..572596 (+) 492 WP_005448492.1 type II secretion system protein M -
  PWW24_RS02810 - 572598..573359 (+) 762 WP_005448490.1 type II secretion system protein N -
  PWW24_RS02815 cysQ 573649..574476 (-) 828 WP_274792308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW24_RS02820 nudE 574524..575090 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWW24_RS02825 nfuA 575266..575850 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW24_RS02830 comF 575948..576673 (-) 726 WP_152163865.1 ComF family protein Machinery gene
  PWW24_RS02835 bioH 576758..577522 (+) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW24_RS02840 - 577659..578123 (+) 465 WP_009698973.1 hypothetical protein -
  PWW24_RS02845 - 578227..580548 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27651.71 Da        Isoelectric Point: 8.4332

>NTDB_id=793743 PWW24_RS02830 WP_152163865.1 575948..576673(-) (comF) [Vibrio harveyi strain fish12]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSALTQLLAERIEQPAPVITSVPIHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793743 PWW24_RS02830 WP_152163865.1 575948..576673(-) (comF) [Vibrio harveyi strain fish12]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTGCGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCACCCGTCATCACCAGCGTGCCCATTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

92.116

100

0.921
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469