Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW23_RS02770 Genome accession   NZ_CP118586
Coordinates   575693..576418 (-) Length   241 a.a.
NCBI ID   WP_274887494.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570693..581418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW23_RS02745 - 571850..572341 (+) 492 WP_005448492.1 type II secretion system protein M -
  PWW23_RS02750 - 572343..573104 (+) 762 WP_005448490.1 type II secretion system protein N -
  PWW23_RS02755 cysQ 573394..574221 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW23_RS02760 nudE 574269..574835 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWW23_RS02765 nfuA 575011..575595 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW23_RS02770 comF 575693..576418 (-) 726 WP_274887494.1 ComF family protein Machinery gene
  PWW23_RS02775 bioH 576503..577267 (+) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW23_RS02780 - 577404..577868 (+) 465 WP_274887495.1 ATP-dependent Lon protease -
  PWW23_RS02785 - 577972..580293 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27715.76 Da        Isoelectric Point: 8.4332

>NTDB_id=793697 PWW23_RS02770 WP_274887494.1 575693..576418(-) (comF) [Vibrio harveyi strain fish6]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTFGDYDFPLSQQVQRFKDHGEAWQVSALTQLLAERIEQPAPVITSVPIHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQSEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793697 PWW23_RS02770 WP_274887494.1 575693..576418(-) (comF) [Vibrio harveyi strain fish6]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTTGGTGATTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTGCGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCACCCGTCATCACCAGCGTGCCCATTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAAGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469