Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW25_RS15205 Genome accession   NZ_CP118584
Coordinates   3231751..3232476 (-) Length   241 a.a.
NCBI ID   WP_029788954.1    Uniprot ID   A0A9X3MHW5
Organism   Vibrio harveyi strain fish5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3226751..3237476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS15180 - 3227908..3228399 (+) 492 WP_005448492.1 type II secretion system protein M -
  PWW25_RS15185 - 3228401..3229162 (+) 762 WP_069686747.1 type II secretion system protein N -
  PWW25_RS15190 cysQ 3229452..3230279 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW25_RS15195 nudE 3230327..3230893 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWW25_RS15200 nfuA 3231069..3231653 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW25_RS15205 comF 3231751..3232476 (-) 726 WP_029788954.1 ComF family protein Machinery gene
  PWW25_RS15210 bioH 3232561..3233325 (+) 765 WP_274876561.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW25_RS15215 - 3233462..3233926 (+) 465 WP_009698973.1 hypothetical protein -
  PWW25_RS15220 - 3234031..3236352 (-) 2322 WP_199449576.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27667.71 Da        Isoelectric Point: 8.4332

>NTDB_id=793677 PWW25_RS15205 WP_029788954.1 3231751..3232476(-) (comF) [Vibrio harveyi strain fish5]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793677 PWW25_RS15205 WP_029788954.1 3231751..3232476(-) (comF) [Vibrio harveyi strain fish5]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

92.116

100

0.921
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469