Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7585_RS23805 Genome accession   NZ_CP131794
Coordinates   5140081..5140506 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2014S01-136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5135081..5145506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7585_RS23790 (Q7585_23800) pilX 5135651..5136238 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  Q7585_RS23795 (Q7585_23805) pilY1 5136250..5139735 (+) 3486 WP_342125574.1 type 4a pilus biogenesis protein PilY1 -
  Q7585_RS23800 (Q7585_23810) pilY2 5139737..5140084 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  Q7585_RS23805 (Q7585_23815) comF 5140081..5140506 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  Q7585_RS23810 (Q7585_23820) ispH 5140553..5141497 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7585_RS23815 (Q7585_23825) fkpB 5141583..5142023 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  Q7585_RS23820 (Q7585_23830) lspA 5142016..5142525 (-) 510 WP_003094728.1 signal peptidase II -
  Q7585_RS23825 (Q7585_23835) ileS 5142518..5145349 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=793637 Q7585_RS23805 WP_003094721.1 5140081..5140506(+) (comF) [Pseudomonas aeruginosa strain 2014S01-136]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=793637 Q7585_RS23805 WP_003094721.1 5140081..5140506(+) (comF) [Pseudomonas aeruginosa strain 2014S01-136]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCAGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383