Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW29_RS03145 Genome accession   NZ_CP118582
Coordinates   632584..633309 (-) Length   241 a.a.
NCBI ID   WP_152163865.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627584..638309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS03120 - 628741..629232 (+) 492 WP_005448492.1 type II secretion system protein M -
  PWW29_RS03125 - 629234..629995 (+) 762 WP_005448490.1 type II secretion system protein N -
  PWW29_RS03130 cysQ 630285..631112 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW29_RS03135 nudE 631160..631726 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWW29_RS03140 nfuA 631902..632486 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW29_RS03145 comF 632584..633309 (-) 726 WP_152163865.1 ComF family protein Machinery gene
  PWW29_RS03150 bioH 633394..634158 (+) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW29_RS03155 - 634295..634759 (+) 465 WP_009698973.1 hypothetical protein -
  PWW29_RS03160 - 634864..637185 (-) 2322 WP_009698972.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27651.71 Da        Isoelectric Point: 8.4332

>NTDB_id=793605 PWW29_RS03145 WP_152163865.1 632584..633309(-) (comF) [Vibrio harveyi strain fish4]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSALTQLLAERIEQPAPVITSVPIHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793605 PWW29_RS03145 WP_152163865.1 632584..633309(-) (comF) [Vibrio harveyi strain fish4]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTGCGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCACCCGTCATCACCAGCGTGCCCATTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
GTTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

92.116

100

0.921
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469