Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW32_RS03410 Genome accession   NZ_CP118580
Coordinates   705065..705790 (-) Length   241 a.a.
NCBI ID   WP_050907059.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700065..710790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW32_RS03385 - 701222..701713 (+) 492 WP_005448492.1 type II secretion system protein M -
  PWW32_RS03390 - 701715..702476 (+) 762 WP_005448490.1 type II secretion system protein N -
  PWW32_RS03395 cysQ 702766..703593 (-) 828 WP_050907061.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW32_RS03400 nudE 703641..704207 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWW32_RS03405 nfuA 704383..704967 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW32_RS03410 comF 705065..705790 (-) 726 WP_050907059.1 ComF family protein Machinery gene
  PWW32_RS03415 bioH 705875..706639 (+) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW32_RS03420 - 706776..707240 (+) 465 WP_009698973.1 hypothetical protein -
  PWW32_RS03425 - 707345..709666 (-) 2322 WP_050907058.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27641.74 Da        Isoelectric Point: 8.5728

>NTDB_id=793563 PWW32_RS03410 WP_050907059.1 705065..705790(-) (comF) [Vibrio harveyi strain fish3]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFGHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIMDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793563 PWW32_RS03410 WP_050907059.1 705065..705790(-) (comF) [Vibrio harveyi strain fish3]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGGCCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCAGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTATGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465