NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	Q7585_RS00100	Genome accession	NZ_CP131794
Coordinates	21240..22265 (+)	Length	341 a.a.
NCBI ID	WP_003097294.1	Uniprot ID	A0A0H2ZJL6
Organism	Pseudomonas aeruginosa strain 2014S01-136
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16240..27265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7585_RS00075 (Q7585_00075)	-	16429..16746 (-)	318	WP_003097288.1	tetratricopeptide repeat protein	-
Q7585_RS00080 (Q7585_00080)	trkA	16895..18268 (-)	1374	WP_003097289.1	Trk system potassium transporter TrkA	-
Q7585_RS00085 (Q7585_00085)	rsmB	18295..19599 (-)	1305	WP_031633955.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
Q7585_RS00090 (Q7585_00090)	fmt	19596..20540 (-)	945	WP_028681046.1	methionyl-tRNA formyltransferase	-
Q7585_RS00095 (Q7585_00095)	def	20595..21101 (-)	507	WP_003107059.1	peptide deformylase	-
Q7585_RS00100 (Q7585_00100)	tsaP	21240..22265 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
Q7585_RS00105 (Q7585_00105)	dprA	22400..23488 (+)	1089	WP_028681047.1	DNA-processing protein DprA	Machinery gene
Q7585_RS00110 (Q7585_00110)	-	23529..24086 (+)	558	WP_003097300.1	Sua5/YciO/YrdC/YwlC family protein	-
Q7585_RS00115 (Q7585_00115)	-	24096..25073 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
Q7585_RS00120 (Q7585_00120)	hemF	25264..26181 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
Q7585_RS00125 (Q7585_00125)	aroE	26239..27063 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 341 a.a. Molecular weight: 37586.01 Da Isoelectric Point: 9.3358

                                >NTDB_id=793563 Q7585_RS00100 WP_003097294.1 21240..22265(+) (tsaP) [Pseudomonas aeruginosa strain 2014S01-136]

MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV

DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA

RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP

GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL

SYALVLMASRPLSVTDRVQNP

Nucleotide

Download Length: 1026 bp

                                >NTDB_id=793563 Q7585_RS00100 WP_003097294.1 21240..22265(+) (tsaP) [Pseudomonas aeruginosa strain 2014S01-136]

ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA

TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC

CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC

GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC

GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA

AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC

CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA

AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA

CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC

GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT

CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG

ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG

AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393

Detailed information NTG0793563