Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWW27_RS14760 Genome accession   NZ_CP118576
Coordinates   3134359..3135084 (-) Length   241 a.a.
NCBI ID   WP_274885847.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3129359..3140084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS14735 - 3130516..3131007 (+) 492 WP_005448492.1 type II secretion system protein M -
  PWW27_RS14740 - 3131009..3131770 (+) 762 WP_274885846.1 type II secretion system protein N -
  PWW27_RS14745 cysQ 3132060..3132887 (-) 828 WP_269987271.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWW27_RS14750 nudE 3132935..3133501 (-) 567 WP_005448482.1 ADP compounds hydrolase NudE -
  PWW27_RS14755 nfuA 3133677..3134261 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PWW27_RS14760 comF 3134359..3135084 (-) 726 WP_274885847.1 ComF family protein Machinery gene
  PWW27_RS14765 bioH 3135169..3135933 (+) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWW27_RS14770 - 3136070..3136534 (+) 465 WP_009698973.1 hypothetical protein -
  PWW27_RS14775 - 3136638..3138959 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27637.73 Da        Isoelectric Point: 8.5728

>NTDB_id=793494 PWW27_RS14760 WP_274885847.1 3134359..3135084(-) (comF) [Vibrio harveyi strain fish1]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFGHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPVPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793494 PWW27_RS14760 WP_274885847.1 3134359..3135084(-) (comF) [Vibrio harveyi strain fish1]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGGCCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGTGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTGCAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGTCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469