Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7588_RS25815 Genome accession   NZ_CP131787
Coordinates   5499169..5499594 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2014S07-062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5494169..5504594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7588_RS25800 (Q7588_25815) pilX 5494733..5495320 (+) 588 WP_024928819.1 type 4a pilus minor pilin PilX -
  Q7588_RS25805 (Q7588_25820) pilY1 5495332..5498823 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  Q7588_RS25810 (Q7588_25825) pilY2 5498825..5499172 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  Q7588_RS25815 (Q7588_25830) comF 5499169..5499594 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  Q7588_RS25820 (Q7588_25835) ispH 5499641..5500585 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7588_RS25825 (Q7588_25840) fkpB 5500671..5501111 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  Q7588_RS25830 (Q7588_25845) lspA 5501104..5501613 (-) 510 WP_003102615.1 signal peptidase II -
  Q7588_RS25835 (Q7588_25850) ileS 5501606..5504437 (-) 2832 WP_034016612.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=793340 Q7588_RS25815 WP_003094721.1 5499169..5499594(+) (comF) [Pseudomonas aeruginosa strain 2014S07-062]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=793340 Q7588_RS25815 WP_003094721.1 5499169..5499594(+) (comF) [Pseudomonas aeruginosa strain 2014S07-062]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383