Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7588_RS02600 Genome accession   NZ_CP131787
Coordinates   570469..571194 (-) Length   241 a.a.
NCBI ID   WP_034073190.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S07-062     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565469..576194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7588_RS02575 (Q7588_02580) - 565941..566456 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  Q7588_RS02580 (Q7588_02585) rarD 567146..568042 (-) 897 WP_003103301.1 EamA family transporter RarD -
  Q7588_RS02585 (Q7588_02590) - 568245..569219 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  Q7588_RS02590 (Q7588_02595) - 569281..570039 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  Q7588_RS02595 (Q7588_02600) - 570107..570427 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  Q7588_RS02600 (Q7588_02605) comF 570469..571194 (-) 726 WP_034073190.1 ComF family protein Machinery gene
  Q7588_RS02605 (Q7588_02610) - 571333..571626 (-) 294 WP_003113255.1 hypothetical protein -
  Q7588_RS02610 (Q7588_02615) - 571680..572606 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  Q7588_RS02615 (Q7588_02620) - 572724..573482 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  Q7588_RS02620 (Q7588_02625) - 573559..573807 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  Q7588_RS02625 (Q7588_02630) - 573818..575194 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  Q7588_RS02630 (Q7588_02635) - 575196..576074 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27077.63 Da        Isoelectric Point: 11.0325

>NTDB_id=793277 Q7588_RS02600 WP_034073190.1 570469..571194(-) (comF) [Pseudomonas aeruginosa strain 2014S07-062]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLLRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=793277 Q7588_RS02600 WP_034073190.1 570469..571194(-) (comF) [Pseudomonas aeruginosa strain 2014S07-062]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCTCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382