Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7589_RS25895 Genome accession   NZ_CP131785
Coordinates   5507753..5508178 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2014S09-209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5502753..5513178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7589_RS25880 (Q7589_25885) pilX 5503323..5503910 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  Q7589_RS25885 (Q7589_25890) pilY1 5503922..5507407 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  Q7589_RS25890 (Q7589_25895) pilY2 5507409..5507756 (+) 348 WP_023098087.1 type 4a fimbrial biogenesis protein PilY2 -
  Q7589_RS25895 (Q7589_25900) comF 5507753..5508178 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  Q7589_RS25900 (Q7589_25905) ispH 5508225..5509169 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7589_RS25905 (Q7589_25910) fkpB 5509255..5509695 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  Q7589_RS25910 (Q7589_25915) lspA 5509688..5510197 (-) 510 WP_003094728.1 signal peptidase II -
  Q7589_RS25915 (Q7589_25920) ileS 5510190..5513021 (-) 2832 WP_023092936.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=793241 Q7589_RS25895 WP_003094721.1 5507753..5508178(+) (comF) [Pseudomonas aeruginosa strain 2014S09-209]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=793241 Q7589_RS25895 WP_003094721.1 5507753..5508178(+) (comF) [Pseudomonas aeruginosa strain 2014S09-209]
ATGAGGACAAGACAGAAGGGCTTCACGCTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCTGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACGCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383