Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KH172YL63_RS00260 Genome accession   NZ_AP022842
Coordinates   50174..50455 (-) Length   93 a.a.
NCBI ID   WP_138781718.1    Uniprot ID   -
Organism   Bacillus sp. KH172YL63     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 45174..55455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS00225 (KH172YL63_00330) - 45291..45620 (+) 330 WP_173104283.1 cyclic-di-AMP receptor -
  KH172YL63_RS00230 (KH172YL63_00340) - 45638..46078 (+) 441 WP_173104284.1 YaaR family protein -
  KH172YL63_RS00235 (KH172YL63_00350) holB 46096..47079 (+) 984 WP_173104285.1 DNA polymerase III subunit delta' -
  KH172YL63_RS00240 (KH172YL63_00360) - 47087..47914 (+) 828 WP_173104286.1 stage 0 sporulation family protein -
  KH172YL63_RS00245 (KH172YL63_00370) yabA 47929..48303 (+) 375 WP_173104287.1 DNA replication initiation control protein YabA -
  KH172YL63_RS00250 (KH172YL63_00380) - 48451..49206 (+) 756 WP_173104288.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KH172YL63_RS00255 (KH172YL63_00390) rsmI 49229..50101 (+) 873 WP_173104289.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KH172YL63_RS00260 (KH172YL63_00400) abrB 50174..50455 (-) 282 WP_138781718.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KH172YL63_RS00265 (KH172YL63_00410) metG 50952..52913 (+) 1962 WP_173104290.1 methionine--tRNA ligase -
  KH172YL63_RS00270 (KH172YL63_00420) - 53207..53974 (+) 768 WP_173104291.1 TatD family hydrolase -
  KH172YL63_RS00275 (KH172YL63_00430) - 54226..55440 (+) 1215 WP_232066081.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10441.15 Da        Isoelectric Point: 6.3528

>NTDB_id=79320 KH172YL63_RS00260 WP_138781718.1 50174..50455(-) (abrB) [Bacillus sp. KH172YL63]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPSMTCQITGEVSDDNIKLANGKLVLSREGAD
QLLKEIQDSLQSK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=79320 KH172YL63_RS00260 WP_138781718.1 50174..50455(-) (abrB) [Bacillus sp. KH172YL63]
ATGAAATCTACAGGTATTGTAAGAAAAGTTGATGAATTAGGCCGTGTCGTTATTCCAATCGAATTACGCCGTACACTTGG
TATTGCTGAGAAAGATGCTTTAGAAATCTACGTTGATGACGAAAGAATCATCTTAAAGAAATACAAGCCAAGCATGACTT
GCCAAATCACTGGTGAAGTTTCTGATGATAACATCAAGCTTGCTAACGGTAAATTGGTTCTTAGCCGTGAAGGTGCAGAT
CAATTACTAAAAGAAATCCAAGACTCACTACAATCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.87

98.925

0.849

Multiple sequence alignment