Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PWA59_RS08465 Genome accession   NZ_CP118541
Coordinates   1665933..1666712 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain HC-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660933..1671712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWA59_RS08445 (PWA59_08445) trmFO 1661620..1662927 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PWA59_RS08450 (PWA59_08450) xerC 1662997..1663914 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  PWA59_RS08455 (PWA59_08455) hslV 1663930..1664475 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  PWA59_RS08460 (PWA59_08460) hslU 1664483..1665895 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  PWA59_RS08465 (PWA59_08465) codY 1665933..1666712 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PWA59_RS08470 (PWA59_08470) flgB 1667066..1667455 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PWA59_RS08475 (PWA59_08475) flgC 1667455..1667907 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PWA59_RS08480 (PWA59_08480) fliE 1667918..1668238 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PWA59_RS08485 (PWA59_08485) fliF 1668281..1669891 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  PWA59_RS08490 (PWA59_08490) fliG 1669904..1670920 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PWA59_RS08495 (PWA59_08495) fliH 1670913..1671668 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=793101 PWA59_RS08465 WP_003154263.1 1665933..1666712(+) (codY) [Bacillus velezensis strain HC-5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=793101 PWA59_RS08465 WP_003154263.1 1665933..1666712(+) (codY) [Bacillus velezensis strain HC-5]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471