Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   Q7591_RS29720 Genome accession   NZ_CP131783
Coordinates   6240221..6240745 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain 2016C02-074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6235221..6245745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7591_RS29705 (Q7591_29705) aroB 6236349..6237455 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  Q7591_RS29710 (Q7591_29710) aroK 6237505..6238023 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q7591_RS29715 (Q7591_29715) pilQ 6238035..6240167 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  Q7591_RS29720 (Q7591_29720) comL/pilP 6240221..6240745 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q7591_RS29725 (Q7591_29725) pilO 6240742..6241365 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7591_RS29730 (Q7591_29730) pilN 6241362..6241958 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  Q7591_RS29735 (Q7591_29735) pilM 6241958..6243022 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q7591_RS29740 (Q7591_29740) - 6243207..6245678 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=793045 Q7591_RS29720 WP_003116136.1 6240221..6240745(-) (comL/pilP) [Pseudomonas aeruginosa strain 2016C02-074]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=793045 Q7591_RS29720 WP_003116136.1 6240221..6240745(-) (comL/pilP) [Pseudomonas aeruginosa strain 2016C02-074]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362