Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PWS06_RS00485 Genome accession   NZ_CP118532
Coordinates   102795..103520 (+) Length   241 a.a.
NCBI ID   WP_274790451.1    Uniprot ID   -
Organism   Vibrio harveyi strain 160-19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97795..108520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS06_RS00470 - 98926..101247 (+) 2322 WP_017189965.1 Tex family protein -
  PWS06_RS00475 - 101352..101816 (-) 465 WP_009698973.1 hypothetical protein -
  PWS06_RS00480 bioH 101946..102710 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  PWS06_RS00485 comF 102795..103520 (+) 726 WP_274790451.1 ComF family protein Machinery gene
  PWS06_RS00490 nfuA 103618..104202 (+) 585 WP_017189962.1 Fe-S biogenesis protein NfuA -
  PWS06_RS00495 nudE 104378..104944 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PWS06_RS00500 cysQ 104992..105819 (+) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWS06_RS00505 - 106109..106870 (-) 762 WP_005448490.1 type II secretion system protein N -
  PWS06_RS00510 - 106872..107363 (-) 492 WP_005448492.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27667.71 Da        Isoelectric Point: 8.4332

>NTDB_id=792960 PWS06_RS00485 WP_274790451.1 102795..103520(+) (comF) [Vibrio harveyi strain 160-19]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=792960 PWS06_RS00485 WP_274790451.1 102795..103520(+) (comF) [Vibrio harveyi strain 160-19]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGATTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469