Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7593_RS27170 Genome accession   NZ_CP131781
Coordinates   5763648..5764073 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2016S09-057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5758648..5769073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7593_RS27155 (Q7593_27150) pilX 5759212..5759799 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  Q7593_RS27160 (Q7593_27155) pilY1 5759811..5763302 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -
  Q7593_RS27165 (Q7593_27160) pilY2 5763304..5763651 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  Q7593_RS27170 (Q7593_27165) comF 5763648..5764073 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  Q7593_RS27175 (Q7593_27170) ispH 5764120..5765064 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7593_RS27180 (Q7593_27175) fkpB 5765150..5765590 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  Q7593_RS27185 (Q7593_27180) lspA 5765583..5766092 (-) 510 WP_003102615.1 signal peptidase II -
  Q7593_RS27190 (Q7593_27185) ileS 5766085..5768916 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=792841 Q7593_RS27170 WP_003094721.1 5763648..5764073(+) (comF) [Pseudomonas aeruginosa strain 2016S09-057]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=792841 Q7593_RS27170 WP_003094721.1 5763648..5764073(+) (comF) [Pseudomonas aeruginosa strain 2016S09-057]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383