Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PSR12_RS16095 Genome accession   NZ_CP118397
Coordinates   3155678..3158110 (-) Length   810 a.a.
NCBI ID   WP_274769731.1    Uniprot ID   -
Organism   Lysinibacillus sp. G01H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3150678..3163110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR12_RS16085 (PSR12_16085) corA 3152688..3153653 (-) 966 WP_221679980.1 magnesium/cobalt transporter CorA -
  PSR12_RS16090 (PSR12_16090) hpaB 3154121..3155554 (-) 1434 WP_221679979.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  PSR12_RS16095 (PSR12_16095) recD2 3155678..3158110 (-) 2433 WP_274769731.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PSR12_RS16100 (PSR12_16100) hisA 3158300..3159067 (+) 768 WP_257520235.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  PSR12_RS16105 (PSR12_16105) - 3159064..3159351 (+) 288 WP_004226823.1 hypothetical protein -
  PSR12_RS16110 (PSR12_16110) - 3160086..3160349 (+) 264 WP_274769734.1 hypothetical protein -
  PSR12_RS16115 (PSR12_16115) - 3160346..3161095 (+) 750 WP_274769735.1 GTP pyrophosphokinase family protein -
  PSR12_RS16120 (PSR12_16120) - 3161185..3162630 (-) 1446 WP_274769737.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90723.06 Da        Isoelectric Point: 4.8359

>NTDB_id=792413 PSR12_RS16095 WP_274769731.1 3155678..3158110(-) (recD2) [Lysinibacillus sp. G01H]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGVGKKTAETIVEKLGANALRVILEDPNALDAVPRLSAEKKEVIHRTIEQNLGL
ERIMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVSVENEVTQEPVSIEQKLTVETAPFIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=792413 PSR12_RS16095 WP_274769731.1 3155678..3158110(-) (recD2) [Lysinibacillus sp. G01H]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATATTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAAATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGACGAACAATATCGATTTACTGGTATTTTAAAACAACATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACGAAAGAAGTGCCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGAGTCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCGAATGCACTCCGTGTTATTTTAGAAGATCCTA
ATGCCCTCGATGCTGTTCCGCGTCTATCTGCTGAAAAAAAAGAAGTTATTCACCGCACCATTGAGCAAAACTTAGGTTTA
GAGCGGATCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTCGGCATGAAAATTTATCAAACCTATCGAACAGA
AGCCATTGAATTATTGACAGAGAATCCATACCGCTTAATTGAAGATGTGGAAGGGGTGGGTTTCTTTCGAGCTGATGAGC
TAGGTGCAAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCAGATGGACATGTCTATCTAGATGCAGAACATGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAAGATATTTCTCAAGCCTGCATCGGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTACCGTCACTGTATTTTTCAGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAACGGAATAATAAGGCT
GAGCATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATTGAGCAGGCTTTAAATTCAGCTGTTATGATATTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTGTATGCAAAGCTTCATGGCCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTACCTGCGATGACCAT
TCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGTGAAGTGACAGGTAAGTTGATTATCGTGG
ATGAAATGTCCATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTA
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTATTAAAGGATTTATTAGCATCCAAGCAGCTACCAACCGT
CGAGTTAACAGATGTTTACCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCCCATCAAATAAAAAAAGGAACGATTC
CAAAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCCGATCAAGTTGCCAACGTTGTAACACAG
GTTGTCAAAAGTGCTGTCGCAAAGGGTCAGGAAATCCGTAATATCCAAGTGTTGGCACCCATGTATAAAGGACCAGCTGG
GATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCAAATGATACTGGAACACGAAAAGAGCTAGTCTTTGGGG
ATGTAACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCAGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGGTCGAAAAACAAGATTTATTGATCGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGATCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAATCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTACTTGCAGATGGTTTACAACGTACAGATGACCTACAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGTCAGTTGAAAATGAAG
TGACGCAGGAGCCTGTTTCCATTGAACAAAAGCTAACAGTAGAAACAGCCCCTTTTATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCCTATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.206

100

0.526