Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q7622_RS05335 Genome accession   NZ_CP131711
Coordinates   1047357..1048079 (+) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2014C08-275     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042357..1053079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7622_RS05315 (Q7622_05315) - 1042442..1044064 (+) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  Q7622_RS05320 (Q7622_05320) amiA3 1044265..1046226 (+) 1962 WP_000748865.1 peptide ABC transporter substrate-binding protein Regulator
  Q7622_RS05325 (Q7622_05325) - 1046398..1046631 (+) 234 WP_000769000.1 hypothetical protein -
  Q7622_RS05330 (Q7622_05330) - 1046649..1047170 (+) 522 Protein_1055 ABC transporter transmembrane domain-containing protein -
  Q7622_RS05335 (Q7622_05335) rcrP 1047357..1048079 (+) 723 WP_001010371.1 ATP-binding cassette domain-containing protein Regulator
  Q7622_RS05340 (Q7622_05340) - 1048237..1049331 (+) 1095 WP_000031964.1 cystathionine gamma-synthase -
  Q7622_RS05345 (Q7622_05345) - 1049339..1050505 (+) 1167 WP_000521384.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=791525 Q7622_RS05335 WP_001010371.1 1047357..1048079(+) (rcrP) [Streptococcus pneumoniae strain 2014C08-275]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=791525 Q7622_RS05335 WP_001010371.1 1047357..1048079(+) (rcrP) [Streptococcus pneumoniae strain 2014C08-275]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363