Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PUW21_RS13355 Genome accession   NZ_CP118167
Coordinates   2564332..2564667 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 21855     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2559332..2569667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS13335 (PUW21_13335) gcvT 2559924..2561012 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  PUW21_RS13340 (PUW21_13340) yqhH 2561454..2563127 (+) 1674 WP_003230203.1 SNF2-related protein -
  PUW21_RS13345 (PUW21_13345) yqhG 2563148..2563942 (+) 795 WP_003230200.1 YqhG family protein -
  PUW21_RS13350 (PUW21_13350) sinI 2564125..2564298 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  PUW21_RS13355 (PUW21_13355) sinR 2564332..2564667 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PUW21_RS13360 (PUW21_13360) tasA 2564760..2565545 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  PUW21_RS13365 (PUW21_13365) sipW 2565609..2566181 (-) 573 WP_003230181.1 signal peptidase I -
  PUW21_RS13370 (PUW21_13370) tapA 2566165..2566926 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  PUW21_RS13375 (PUW21_13375) yqzG 2567198..2567524 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  PUW21_RS13380 (PUW21_13380) spoIIT 2567566..2567745 (-) 180 WP_003230176.1 YqzE family protein -
  PUW21_RS13385 (PUW21_13385) comGG 2567816..2568190 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  PUW21_RS13390 (PUW21_13390) comGF 2568191..2568574 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  PUW21_RS13395 (PUW21_13395) comGE 2568600..2568947 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  PUW21_RS13400 (PUW21_13400) comGD 2568931..2569362 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  PUW21_RS13405 (PUW21_13405) comGC 2569352..2569648 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=790975 PUW21_RS13355 WP_003226345.1 2564332..2564667(+) (sinR) [Bacillus subtilis strain 21855]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=790975 PUW21_RS13355 WP_003226345.1 2564332..2564667(+) (sinR) [Bacillus subtilis strain 21855]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1