Detailed information NTG0790814

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP78_RS29195
• Genome accession: NZ_CP118155
• Coordinates: 6494751..6496079 (+)
• Length: 442 a.a.
• NCBI ID: WP_124325552.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17411
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6489751..6501079

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP78_RS29175 (PUP78_29175)	pgeF	6491249..6491974 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
PUP78_RS29180 (PUP78_29180)	rluD	6491971..6492933 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP78_RS29185 (PUP78_29185)	-	6493086..6494108 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP78_RS29190 (PUP78_29190)	-	6494243..6494476 (+)	234	WP_007924721.1	PP0621 family protein	-
PUP78_RS29195 (PUP78_29195)	pilR	6494751..6496079 (+)	1329	WP_124325552.1	sigma-54-dependent transcriptional regulator	Regulator
PUP78_RS29200 (PUP78_29200)	thiO	6496076..6497176 (-)	1101	WP_124325553.1	glycine oxidase ThiO	-
PUP78_RS29205 (PUP78_29205)	-	6497231..6497632 (-)	402	WP_097305151.1	type IV pilin protein	-
PUP78_RS29210 (PUP78_29210)	-	6497646..6500717 (-)	3072	WP_124325554.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48824.16 Da
• Isoelectric Point: 8.7307

>NTDB_id=790814 PUP78_RS29195 WP_124325552.1 6494751..6496079(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17411]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790814 PUP78_RS29195 WP_124325552.1 6494751..6496079(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17411]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAAGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTACGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457