Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   MGCS35922_RS02000 Genome accession   NZ_CP118097
Coordinates   369121..370044 (+) Length   307 a.a.
NCBI ID   WP_003057816.1    Uniprot ID   A0A9X8T611
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS35922     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 364121..375044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS35922_RS01985 (MGCS35922_00808) amiC 365621..367123 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  MGCS35922_RS01990 (MGCS35922_00810) amiD 367123..368049 (+) 927 WP_084916649.1 oligopeptide ABC transporter permease OppC Regulator
  MGCS35922_RS01995 (MGCS35922_00812) amiE 368058..369128 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  MGCS35922_RS02000 (MGCS35922_00814) amiF 369121..370044 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  MGCS35922_RS02005 (MGCS35922_00816) - 370071..371111 (-) 1041 Protein_342 IS30 family transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.93 Da        Isoelectric Point: 6.4058

>NTDB_id=790090 MGCS35922_RS02000 WP_003057816.1 369121..370044(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35922]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=790090 MGCS35922_RS02000 WP_003057816.1 369121..370044(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35922]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGCGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAGGAAAAGATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGCCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGACTTACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAACCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAATCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.759

100

0.818
  amiF Streptococcus thermophilus LMD-9

81.433

100

0.814
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814