Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PUW55_RS11275 Genome accession   NZ_CP118083
Coordinates   2395603..2397471 (-) Length   622 a.a.
NCBI ID   WP_274982627.1    Uniprot ID   -
Organism   Bifidobacterium breve strain VSI11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390603..2402471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW55_RS11260 (PUW55_11260) - 2391169..2392587 (-) 1419 WP_274982626.1 MFS transporter -
  PUW55_RS11265 (PUW55_11265) - 2392692..2393633 (+) 942 WP_021650033.1 FAD:protein FMN transferase -
  PUW55_RS11270 (PUW55_11270) rcrQ 2393642..2395471 (-) 1830 WP_019727589.1 ABC transporter ATP-binding protein Regulator
  PUW55_RS11275 (PUW55_11275) rcrP 2395603..2397471 (-) 1869 WP_274982627.1 ABC transporter ATP-binding protein Regulator
  PUW55_RS11280 (PUW55_11280) - 2397655..2398176 (-) 522 WP_065457860.1 MarR family transcriptional regulator -
  PUW55_RS11285 (PUW55_11285) - 2398782..2399366 (-) 585 WP_021650037.1 LPXTG-motif protein cell wall anchor domain protein -
  PUW55_RS11290 (PUW55_11290) - 2399407..2399844 (-) 438 WP_021650038.1 hypothetical protein -
  PUW55_RS11295 (PUW55_11295) - 2399834..2400394 (+) 561 WP_021650039.1 transposase family protein -
  PUW55_RS11300 (PUW55_11300) - 2400541..2401089 (+) 549 Protein_2192 transposase -
  PUW55_RS11305 (PUW55_11305) - 2401377..2401835 (-) 459 WP_223261729.1 sugar O-acetyltransferase -
  PUW55_RS11310 (PUW55_11310) - 2401876..2402028 (-) 153 WP_021650043.1 hypothetical protein -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68094.78 Da        Isoelectric Point: 5.3309

>NTDB_id=789982 PUW55_RS11275 WP_274982627.1 2395603..2397471(-) (rcrP) [Bifidobacterium breve strain VSI11]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWTAGGKMLLISLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQGLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRVADIAKTGQTGTVEFKDVSFTYPDSREAMLQGINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGRV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGEKPGENDAVELADTSTPAGRKREALQLATDAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQRQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAK
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=789982 PUW55_RS11275 WP_274982627.1 2395603..2397471(-) (rcrP) [Bifidobacterium breve strain VSI11]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGACCGCCGGCGGCAAGATGCTGCTGATCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTAATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GGGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACTATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGTGGCCGATATCGCAAAGACCGGGCAGACGGGCACTGTGGAATTCAAGGACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCCATGCTGCAGGGCATCAACTTTAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATCAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGCCGGGTG
CTGGTCGATGGCGTGGACGTGCGCGACTATGACATGGTTGCCCTGCGAGACAAAATCGGCTACGTGCCGCAGCGTTCCGT
GCTGTTCAAGGGGACTGTGGCCGGCAATATCAGCTATGGCGAAAAGCCCGGCGAGAACGACGCGGTCGAACTCGCGGATA
CCTCTACTCCCGCCGGCCGCAAGCGCGAGGCGCTTCAGCTGGCCACCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAGACAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCAAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTCGTGGGCCAAGGCACGCATAGGGAGCTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.576

100

0.494