Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PUW71_RS03295 Genome accession   NZ_CP118053
Coordinates   651256..652101 (+) Length   281 a.a.
NCBI ID   WP_138284047.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 646256..657101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS03265 (PUW71_03265) - 646479..647357 (+) 879 WP_118138820.1 F0F1 ATP synthase subunit gamma -
  PUW71_RS03270 (PUW71_03270) atpD 647392..648798 (+) 1407 WP_024051895.1 F0F1 ATP synthase subunit beta -
  PUW71_RS03275 (PUW71_03275) - 648809..649228 (+) 420 WP_118138821.1 F0F1 ATP synthase subunit epsilon -
  PUW71_RS03280 (PUW71_03280) - 649332..649562 (+) 231 WP_081333905.1 DUF1146 family protein -
  PUW71_RS03285 (PUW71_03285) murA 649600..650880 (+) 1281 WP_150889793.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PUW71_RS03290 (PUW71_03290) - 650873..651049 (+) 177 WP_024051892.1 DNA-directed RNA polymerase subunit beta -
  PUW71_RS03295 (PUW71_03295) endA 651256..652101 (+) 846 WP_138284047.1 DNA/RNA non-specific endonuclease Machinery gene
  PUW71_RS03300 (PUW71_03300) - 652513..653657 (-) 1145 Protein_611 IS110 family transposase -
  PUW71_RS03305 (PUW71_03305) - 653909..655645 (+) 1737 WP_024051888.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30757.52 Da        Isoelectric Point: 10.4823

>NTDB_id=789603 PUW71_RS03295 WP_138284047.1 651256..652101(+) (endA) [Streptococcus anginosus strain VSI40]
MVRKKSNQKVTQSVAGLVIALVLALGGYSFSNHHSSTKPSDSTAINRSIRTNHAAPSQELAQSVVIESVKRQLKGKIEWN
GAGAFIVNENKNDLDAKVGSIPYADNKTKLVRGRTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGEYH
HAVDRGHLLGYALIGNLKGFDASTSNPKNIALQTAWANQANTGHSTGQNFYETKVRKALDKNKRVRYRVTLIYANEQDLV
PVGSHIEAKSSDSSLEINVFVPNVQTGLRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=789603 PUW71_RS03295 WP_138284047.1 651256..652101(+) (endA) [Streptococcus anginosus strain VSI40]
ATGGTGAGAAAGAAATCCAACCAGAAAGTAACACAAAGTGTAGCTGGTCTGGTTATAGCACTGGTTCTTGCGCTAGGAGG
TTATTCTTTTAGCAATCATCATAGTAGTACGAAGCCTTCTGACAGCACTGCTATTAATCGAAGCATTCGGACGAATCATG
CAGCACCCAGTCAAGAATTAGCACAGAGCGTTGTAATAGAATCTGTCAAACGACAGCTCAAAGGGAAAATCGAGTGGAAT
GGCGCAGGGGCTTTTATTGTCAATGAGAATAAAAATGATTTAGATGCTAAAGTGGGCAGTATTCCTTATGCGGATAATAA
GACAAAATTGGTCAGAGGTCGAACTGTTCCGACGGTAGCAAATGCTCTTTTGTCTAAAGCTACTCGTCAGTATAGGAATC
GTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAGGTGAAGCATTTATCGGGTGAATATCAT
CATGCAGTTGACCGTGGACATCTGCTAGGTTATGCCTTGATTGGTAACTTGAAAGGCTTTGATGCTTCGACTAGCAATCC
TAAAAATATTGCGCTGCAAACGGCTTGGGCCAATCAAGCAAATACTGGTCATTCTACGGGTCAAAATTTTTATGAAACAA
AGGTACGTAAGGCACTAGACAAAAATAAACGAGTTCGGTATCGGGTGACTTTAATTTATGCTAATGAACAGGATTTGGTG
CCGGTTGGTTCGCATATTGAAGCTAAATCAAGCGATAGTAGCTTGGAAATAAATGTCTTTGTTCCCAACGTACAGACAGG
ACTTCGGCTAAATTATCAAACAGGAGAAGTGACTGTTACCAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

76.549

80.427

0.616
  endA Streptococcus pneumoniae D39

76.549

80.427

0.616
  endA Streptococcus pneumoniae R6

76.549

80.427

0.616
  endA Streptococcus pneumoniae TIGR4

76.549

80.427

0.616