Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QML92_RS06545 Genome accession   NZ_AP025937
Coordinates   1315250..1315972 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700792     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310250..1320972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML92_RS06535 (PC0780_13020) - 1312825..1313991 (-) 1167 WP_000521375.1 MalY/PatB family protein -
  QML92_RS06540 (PC0780_13030) - 1313999..1315093 (-) 1095 WP_000031972.1 cystathionine gamma-synthase -
  QML92_RS06545 rcrP 1315250..1315972 (-) 723 WP_001010371.1 ATP-binding cassette domain-containing protein Regulator
  QML92_RS06550 - 1316159..1316932 (-) 774 Protein_1302 ABC transporter ATP-binding protein -
  QML92_RS06555 (PC0780_13060) amiA 1317104..1319062 (-) 1959 WP_000748880.1 peptide ABC transporter substrate-binding protein Regulator
  QML92_RS06560 (PC0780_13070) - 1319266..1320888 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=78932 QML92_RS06545 WP_001010371.1 1315250..1315972(-) (rcrP) [Streptococcus pneumoniae strain PZ900700792]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=78932 QML92_RS06545 WP_001010371.1 1315250..1315972(-) (rcrP) [Streptococcus pneumoniae strain PZ900700792]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCTACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment