Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q6D61_RS27720 Genome accession   NZ_CP131614
Coordinates   5828843..5829268 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 1709-25403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5823843..5834268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6D61_RS27705 (Q6D61_27715) pilX 5824413..5825000 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  Q6D61_RS27710 (Q6D61_27720) pilY1 5825012..5828497 (+) 3486 WP_034040518.1 type 4a pilus biogenesis protein PilY1 -
  Q6D61_RS27715 (Q6D61_27725) pilY2 5828499..5828846 (+) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  Q6D61_RS27720 (Q6D61_27730) comF 5828843..5829268 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  Q6D61_RS27725 (Q6D61_27735) ispH 5829315..5830259 (-) 945 WP_034040515.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q6D61_RS27730 (Q6D61_27740) fkpB 5830345..5830785 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  Q6D61_RS27735 (Q6D61_27745) lspA 5830778..5831287 (-) 510 WP_003102615.1 signal peptidase II -
  Q6D61_RS27740 (Q6D61_27750) ileS 5831280..5834111 (-) 2832 WP_023103515.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=789271 Q6D61_RS27720 WP_003094721.1 5828843..5829268(+) (comF) [Pseudomonas aeruginosa strain 1709-25403]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=789271 Q6D61_RS27720 WP_003094721.1 5828843..5829268(+) (comF) [Pseudomonas aeruginosa strain 1709-25403]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383