Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PT671_RS17040 Genome accession   NZ_CP118021
Coordinates   3424442..3426838 (+) Length   798 a.a.
NCBI ID   WP_003225889.1    Uniprot ID   E0TUJ9
Organism   Bacillus spizizenii strain B-354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419442..3431838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS17015 - 3419523..3420788 (-) 1266 WP_003225877.1 replication-associated recombination protein A -
  PT671_RS17020 cymR 3420990..3421406 (+) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  PT671_RS17025 - 3421425..3422567 (+) 1143 WP_003225881.1 cysteine desulfurase family protein -
  PT671_RS17030 mnmA 3422595..3423710 (+) 1116 WP_003225883.1 tRNA 2-thiouridine(34) synthase MnmA -
  PT671_RS17035 - 3423796..3424416 (+) 621 WP_230939518.1 tetratricopeptide repeat protein -
  PT671_RS17040 recD2 3424442..3426838 (+) 2397 WP_003225889.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PT671_RS17045 - 3426895..3427419 (+) 525 WP_079996427.1 PRC-barrel domain-containing protein -
  PT671_RS17050 - 3427431..3427622 (+) 192 WP_003225893.1 hypothetical protein -
  PT671_RS17055 - 3427644..3427775 (+) 132 WP_003225895.1 YrzQ family protein -
  PT671_RS17060 - 3427873..3428934 (+) 1062 WP_003225897.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89236.84 Da        Isoelectric Point: 5.0276

>NTDB_id=789178 PT671_RS17040 WP_003225889.1 3424442..3426838(+) (recD2) [Bacillus spizizenii strain B-354]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQQHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERIKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIANQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASRVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNIMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVNFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSIQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=789178 PT671_RS17040 WP_003225889.1 3424442..3426838(+) (recD2) [Bacillus spizizenii strain B-354]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAGGGAACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTTACAGAGACCTCCGAAGCGATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATCCCGACGACTAAGGAAGGCATCATTCAATATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCGATTAATAAAATTTTGGCTGACG
CTTCAGTGCTTTATGATGTACCGAGACTGTCAAAAAAGAAAGCTGACACGCTAGCCGGTGCGTTGCAGCAGCATCAGGGA
CTGGAGCAAATCATGATTTCCCTGAATCAGTTCGGCTTTGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGGATCGGGTTTGGGAAAGCGGATG
AGCTTGGCAGCAGAATGGGGCTTTCGGGTAATCATCCTGAGCGGATAAAAGCCGCGATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGCAGCTGATTATCGACACCCAATCACTGTTGAACCAGTCAGCAAG
GGAAGGACAGCGTATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ACGGCCGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAACCAAACT
GAATATGATGACCAGTTTCCTGAATCAGAATTTCTGCTTGCTTTAGGCGAACTGGAAGAACGGATGAACGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTTCTTTTAACGGGAGGCCCAGGAACAGGGAAAA
CGACGGTAATCAGAGGAATTGTCGAACTGTACGGGGAGCTTCACGGCGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCAAAACGAATGAGTGAATCAACGGGCCTTCCGGCAGT
CACGATACACAGGCTGCTTGGTTGGAACGGCGCAGAAGGCTTCACCCATACAGAGGATCAGCCGATCGAGGGAAAGCTGT
TAATTATCGATGAAGCCAGTATGCTTGATATATGGCTGGCGAACCACTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTGGGAGACGAAGATCAGCTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCCCGGGTGAT
TCCGACTGTGAGACTGACAGACATCTACCGCCAGGCGGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCACCTACAAAGGACCGTTCTTTTATTCGCTGCGGTGGCTCGCAAATAAAAGAAGTG
GTTGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATACAGGTTCTCGCCCCGATGTACAGAGG
AAAAGCCGGCATCAATGAACTGAATATAATGCTGCAGGATATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGAGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTCGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGGGAAATTACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGACATGGCCGTTGTTAATTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAACCAATTTACCCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAATCTTCTTTATACCGCGATTACG
AGAGCAAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGACGCAACTGTCAG
ACAGACTTCCTTGAAAAACAGGTTGTCAATACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTTTGCAAAAAGAGCTCC
CGTTCAGTGTACACGATGCCAATATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TUJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.62

99.875

0.985