Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PT671_RS00565 Genome accession   NZ_CP118021
Coordinates   174371..175264 (-) Length   297 a.a.
NCBI ID   WP_003220839.1    Uniprot ID   E0TUA0
Organism   Bacillus spizizenii strain B-354     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 169371..180264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS00550 xerC 169744..170658 (-) 915 WP_003220846.1 tyrosine recombinase XerC -
  PT671_RS00555 trmFO 170726..172033 (-) 1308 WP_003220844.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PT671_RS00560 topA 172109..174184 (-) 2076 WP_003220843.1 type I DNA topoisomerase -
  PT671_RS00565 dprA 174371..175264 (-) 894 WP_003220839.1 DNA-processing protein DprA Machinery gene
  PT671_RS00570 sucD 175325..176227 (-) 903 WP_003220837.1 succinate--CoA ligase subunit alpha -
  PT671_RS00575 sucC 176256..177413 (-) 1158 WP_003220835.1 ADP-forming succinate--CoA ligase subunit beta -
  PT671_RS00580 - 177587..177868 (-) 282 WP_003220834.1 FlhB-like flagellar biosynthesis protein -
  PT671_RS00585 - 177865..179595 (-) 1731 WP_003220832.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32921.32 Da        Isoelectric Point: 9.9037

>NTDB_id=789117 PT671_RS00565 WP_003220839.1 174371..175264(-) (dprA) [Bacillus spizizenii strain B-354]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVLETVTRGKIKAAALKNKIEEQYPKLQRVLAAYHEQGINPIPI
SSKQYPFWLKTIYDPPAVLFAKGDLTLLSKGRKIGIVGTRNPTAYGIQIVNHLTKELCRKNWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=789117 PT671_RS00565 WP_003220839.1 174371..175264(-) (dprA) [Bacillus spizizenii strain B-354]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACTTCACCCGTGTTAGAAACTGTTACTCGAGGTAAAATAAAGGCAGCTGCATTAAAAA
ATAAAATAGAAGAACAATATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGAATTAACCCCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATTTGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACAAATTGTCAATCATCTTA
CAAAAGAGCTTTGCCGTAAAAATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCGGGCGGATTTCAACACATATATCCCCGGGAAAACCTTCAGTTAGC
AGATCATATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATTAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGTGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGAAGAGAAGTATTTGCCGTACCCGGCTCATTATTTGATCCGTACGCAGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TUA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.276

100

0.943