Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PT671_RS00535 Genome accession   NZ_CP118021
Coordinates   166958..167737 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus spizizenii strain B-354     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 161958..172737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS00505 fliH 161974..162726 (-) 753 WP_003220862.1 flagellar assembly protein FliH -
  PT671_RS00510 fliG 162719..163735 (-) 1017 WP_003220860.1 flagellar motor switch protein FliG -
  PT671_RS00515 fliF 163748..165358 (-) 1611 WP_079996358.1 flagellar basal-body MS-ring/collar protein FliF -
  PT671_RS00520 fliE 165404..165724 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PT671_RS00525 flgC 165736..166188 (-) 453 WP_003220854.1 flagellar basal body rod protein FlgC -
  PT671_RS00530 flgB 166188..166577 (-) 390 WP_003220852.1 flagellar basal body rod protein FlgB -
  PT671_RS00535 codY 166958..167737 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PT671_RS00540 hslU 167777..169169 (-) 1393 Protein_107 HslU--HslV peptidase ATPase subunit -
  PT671_RS00545 clpQ 169186..169731 (-) 546 WP_003220848.1 ATP-dependent protease subunit ClpQ -
  PT671_RS00550 xerC 169744..170658 (-) 915 WP_003220846.1 tyrosine recombinase XerC -
  PT671_RS00555 trmFO 170726..172033 (-) 1308 WP_003220844.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=789116 PT671_RS00535 WP_003220850.1 166958..167737(-) (codY) [Bacillus spizizenii strain B-354]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=789116 PT671_RS00535 WP_003220850.1 166958..167737(-) (codY) [Bacillus spizizenii strain B-354]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTATTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACTTGTTTCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGGATTACCC
GTTCTGTTATTGTGAATGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467